Gene omics information

Query gene ID	GmaAffx.78321.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.2	GmaAffx.78321.1.S1_at	BM309498	-	-	1e+0	At5g62810	PEX14	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.85162.1.S1_at	BI315839	MYB transcription factor MYB133	-	6e-22	At1g01520	myb family transcription factor	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.3741.1.S1_at	BM307322	-	-	7e-6	At5g26610	D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.644.2.S1_at	BG046072	-	-	6e-2	At3g29090	pectinesterase family protein	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.67700.1.S1_at	CB063625	-	-	9e-1	At5g13620	unknown protein	S.X.	H.G.	Please select
0.47	66.6	Gma.15087.2.S1_at	CA800369	-	-	1e-94	At4g28860	ckl4 (Casein Kinase I-like 4)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.73299.1.S1_at	BF597534	-	-	8e-3	At2g01680	ankyrin repeat family protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.83672.1.S1_at	BU926827	-	-	2e-51	At2g26000	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.26272.1.S1_at	BE330107	-	-	6e-36	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.9	GSM292653	7_C156.1I.V7I2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM292596	26_C146.1I.V7I1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM294114	6_3114.2G.SLG1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3	98.6	GSM292704	51_C171.1J.V7J2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM293757	89_3048.2C.V7C2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM292165	2-1008.1A.R004P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM292355	24_C103.1F.R9F3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM292589	19_C160.1I.V7I3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM294668	3_3218.2M.V7M1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Gma.5808.1.S1_at	AW350083	-	-	0	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	C.G.	S.X.	Please select
0.05	9e-2	38	Gma.4868.1.A1_at	BI969469	-	-	1e+1	At4g11175	translation initiation factor IF-1, chloroplast, putative	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C207000007_at	PsAffx.C207000007	-	-	2e-2	At2g32710	KRP4	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.78253.1.S1_at	BM954563	-	-	2e-1	At4g18070	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Gma.18054.1.S1_at	BE023870	N-rich protein	-	2e-26	At5g42050	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.82721.1.S1_at	AW757398	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.32382.1.S1_at	BG237899	-	-	4e-22	At1g09440	protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.6302.1.S1_at	BI786195	isoflavone conjugate-specific beta-glucosidase	-	6e-5	At2g25630	BGLU14 (BETA GLUCOSIDASE 14)	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.15948.1.S1_at	BE059379	-	-	2e-6	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e+0	34	Arabidopsis thaliana	At5g62810	836402	PEX14	mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	Contig11682_at	Contig11682	-	-	2e-2	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os05g0448700	AK063748.1	-	Conserved hypothetical protein	5e+0	At4g24026	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-32	139	Populus trichocarpa	PtpAffx.212775.1.S1_at	pmrna25002	hypothetical protein	-	2e-16	At5g62810	PEX14	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.24049.1.S1_at	CA725556	-	-	2e-1	At5g02040	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	C.G.	S.X.	Please select
0.21	7e-27	119	Vitis vinifera	1618699_at	CB913495	-	-	4e-5	At5g62810	PEX14	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	Zm.9623.1.A1_at	BM347558	-	-	5e+0	At5g56520	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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