CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.77917.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 78.8 GmaAffx.77917.2.S1_at BM309510 - - 2e-4 At3g48860 unknown protein S.X. H.G.
0.57 78.8 GmaAffx.76324.1.S1_at BE473997 - - 3e-1 At1g51450 SPla/RYanodine receptor (SPRY) domain-containing protein S.X. H.G.
0.50 71.7 GmaAffx.75246.1.S1_at AW508335 - - 2e-14 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) S.X. H.G.
0.44 63.3 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein S.X. H.G.
0.42 59.3 GmaAffx.43012.1.S1_at AW733354 - - 1e-8 At2g35110 GRL (GNARLED) S.X. H.G.
0.26 33.9 Gma.13221.2.S1_at BU082968 - - 1e+0 At1g51390 NFU5 S.X. H.G.
0.13 16.3 GmaAffx.77005.1.S1_at AW509412 - - 1e-72 At3g58610 ketol-acid reductoisomerase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 99.2 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
8.4 99.1 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
7.4 98.9 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
7.2 98.9 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
7.2 98.9 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.8 98.4 GSM293838 78_3062.2D.SLD2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.8 97.9 GSM292981 58_1514.1M.R310P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM292868 45_1470.1L.R285P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293402 85_1563.1Q.R151U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 5e-68 258 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein C.G. S.X.
0.08 8e-2 38 GmaAffx.91503.1.S1_at CF807228 - - 4e+0 At4g24026 unknown protein C.G. S.X.
0.02 1e+0 34 PsAffx.C202000021_at PsAffx.C202000021 - - 3e+0 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) C.G. S.X.
0.06 1e+0 34 GmaAffx.26983.1.S1_at BG042195 - - 4e+0 At2g35910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e+0 34 GmaAffx.20688.2.S1_at AI959836 - - 2e-9 At4g36830 GNS1/SUR4 membrane family protein C.G. S.X.
0.04 1e+0 34 Gma.13507.1.A1_at CD399487 - - 2e+0 At5g37290 armadillo/beta-catenin repeat family protein C.G. S.X.
0.01 5e+0 32 PsAffx.C7000020_at PsAffx.C7000020 - - 2e-1 At5g38970 BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1) C.G. S.X.
0.02 5e+0 32 PsAffx.C49000078_at PsAffx.C49000078 - - 2e+0 At1g76100 PETE1 (PLASTOCYANIN 1) C.G. S.X.
0.01 5e+0 32 PsAffx.C294000012_at PsAffx.C294000012 - - 1e-3 At1g73640 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 46 Arabidopsis thaliana At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HU03D17u_s_at HU03D17u - - 2e+0 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.06 1e-1 38 Oryza sativa Os05g0308900 9633.m02163 - - 3e+0 At4g22950 AGL19 (AGAMOUS-LIKE 19) C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.216220.1.S1_at pmrna30870 hypothetical protein - 9e-1 At3g43153 cAMP-dependent protein kinase inhibitor-related C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.57207.1.S1_at CA634605 - - 3e+0 At1g28160 ethylene-responsive element-binding family protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1622147_at CF604303 hypothetical protein LOC100256784 - 7e-2 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.04 4e-1 34 Zea mays Zm.4378.1.A1_at CK370715 hypothetical protein LOC100194381 - 1e+0 At1g06475 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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