CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.77917.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 66.6 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein S.X. H.G.
0.50 71.7 GmaAffx.77917.2.S1_at BM309510 - - 2e-4 At3g48860 unknown protein S.X. H.G.
0.50 71.7 GmaAffx.43012.1.S1_at AW733354 - - 1e-8 At2g35110 GRL (GNARLED) S.X. H.G.
0.40 57.1 GmaAffx.75246.1.S1_at AW508335 - - 2e-14 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) S.X. H.G.
0.30 40.4 Gma.13221.2.S1_at BU082968 - - 1e+0 At1g51390 NFU5 S.X. H.G.
0.29 39.0 Gma.1155.1.S1_at BE805343 - - 6e-6 At1g13750 calcineurin-like phosphoesterase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.6 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.1 98.5 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.0 98.5 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.7 98.4 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.0 98.0 GSM293604 34_2072.2B.R303P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.0 98.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.7 97.8 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
4.1 97.3 GSM294175 38_3132.2H.R9H1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 2e-44 180 GmaAffx.77917.2.S1_at BM309510 - - 2e-4 At3g48860 unknown protein C.G. S.X.
0.01 6e-1 36 PsAffx.C7000094_at PsAffx.C7000094 - - 7e-1 At3g09730 unknown protein C.G. S.X.
0.02 6e-1 36 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein C.G. S.X.
0.00 3e+0 34 PsAffx.C26000067_at PsAffx.C26000067 - - 5e-3 At5g23720 PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) C.G. S.X.
0.03 3e+0 34 HgAffx.3511.1.S1_at CK349179 - - 2e+0 At5g56700 F-box protein-related C.G. S.X.
0.03 3e+0 34 GmaAffx.23978.1.S1_at BQ081616 - - 2e-16 At2g35720 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 3e+0 34 Gma.3332.1.S1_at BQ298780 - - 3e-5 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) C.G. S.X.
0.02 1e+1 32 PsAffx.CL1956Contig1_at PsAffx.CL1956Contig1 - - 5e+0 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
0.02 1e+1 32 PsAffx.C76000043_at PsAffx.C76000043 - - 3e-1 At5g42450 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-26 121 Arabidopsis thaliana At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV - - - C.G. S.X.
0.02 9e-1 34 Hordeum vulgare HV_CEb0023K20r2_at HV_CEb0023K20r2 - - 1e+0 At1g76954 - C.G. S.X.
0.08 4e-3 44 Oryza sativa Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein C.G. S.X.
0.12 3e-18 93 Populus trichocarpa PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.08 8e-3 42 Triticum aestivum Ta.9619.1.S1_a_at CD908424 - - 8e-10 At3g48860 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1610120_at CF211637 hypothetical protein LOC100265532 - 1e+0 At2g36080 DNA-binding protein, putative C.G. S.X.
0.02 1e+1 30 Zea mays Zm.975.1.A1_at CF016461 hypothetical protein LOC100274388 - 3e-2 At4g27660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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