Gene omics information

Query gene ID	GmaAffx.77778.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	S.X.	H.G.	Please select
0.77	90.3	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.77	90.3	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92184.1.S1_s_at	CF807909	-	-	3e-1	At2g16900	-	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.9	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293800	43_2177.2D.R141L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM294238	87_2337.2H.R240L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293662	87_3029.2B.R9B2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292791	51_1403.1K.R250L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	36	PsAffx.C81000013_at	PsAffx.C81000013	-	-	3e-3	At1g20920	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Gma.2486.1.S1_at	BF219523	-	-	7e-7	At2g34555	ATGA2OX3 (gibberellin 2-oxidase 3)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C317000009_at	PsAffx.C317000009	-	-	6e+0	At1g43171	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.46118.1.A1_at	BI784649	-	-	5e+0	At5g37910	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.9656.1.S1_at	CD401156	-	-	2e-16	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.9656.2.S1_a_at	BE059434	-	-	3e-32	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.9656.1.S1_x_at	CD401156	-	-	2e-16	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C4000172_at	PsAffx.C4000172	-	-	4e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C4000024_at	PsAffx.C4000024	-	-	1e-2	At5g57345	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g52480	835324	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	38	Hordeum vulgare	HU03G20u_at	HU03G20u	-	-	1e+0	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os03g0712300	AK120951.1	-	CROC-1-like protein (Fragment)	2e-21	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.205312.1.S1_s_at	pmrna10527	hypothetical protein	-	3e-2	At2g17680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-4	46	Triticum aestivum	Ta.8223.1.A1_at	BQ161619	-	-	4e+0	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.13	3e-17	87	Vitis vinifera	1620130_at	CF404666	hypothetical protein LOC100257505	-	4e+0	At1g10800	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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