Gene omics information

Query gene ID	GmaAffx.77256.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.8	GmaAffx.77256.1.S1_at	BU577239	-	-	7e-8	At4g12720	NUDT7	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.89269.1.A1_s_at	CK605965	MYB transcription factor MYB92	-	3e-16	At3g62610	ATMYB11 (MYB DOMAIN PROTEIN 11)	S.X.	H.G.	Please select
0.39	54.5	GmaAffx.55244.2.S1_at	BI893826	-	-	1e-3	At5g49700	DNA-binding protein-related	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.91459.1.S1_at	CF807184	-	-	2e+0	At3g44140	unknown protein	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.92458.1.S1_at	CF808183	-	-	2e-21	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.74889.1.S1_at	CA851547	-	-	9e-12	At2g41690	AT-HSFB3	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.78997.1.S1_at	BU760916	-	-	2e-1	At1g11940	unknown protein	S.X.	H.G.	Please select
0.26	33.9	Gma.6719.4.S1_at	BU762353	-	-	2e+0	At5g26848	unknown protein	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.32773.1.S1_at	BM527598	-	-	1e-8	At5g56650	ILL1	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.67470.3.S1_at	BM085427	-	-	2e-1	At3g51000	epoxide hydrolase, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.2	99.9	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
36.8	99.9	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
21.4	99.8	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.3	99.7	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.4	99.7	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.4	99.7	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.6	99.6	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.6	99.6	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
14.8	99.6	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.5	99.5	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	44	GmaAffx.25060.1.S1_at	CD415199	-	-	3e-1	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please select
0.01	9e-2	38	PsAffx.C63000064_at	PsAffx.C63000064	-	-	1e+0	At3g63200	PLP9 (PATATIN-LIKE PROTEIN 9)	C.G.	S.X.	Please select
0.16	9e-2	38	GmaAffx.45270.3.S1_at	BE800986	-	-	4e-6	At5g47240	atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.83290.1.S1_at	CA853059	-	-	3e-14	At3g54610	GCN5	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.71400.1.S1_at	BI892681	-	-	1e-9	At5g03795	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.44301.1.S1_at	AW395344	-	-	2e-2	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.psMY004iH03r_at	PsAffx.psMY004iH03r	-	-	2e-1	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.CL617Contig1_at	PsAffx.CL617Contig1	-	-	2e-1	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.02	6e+0	32	PsAffx.CL4Contig3_at	PsAffx.CL4Contig3	-	-	7e-1	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	7e-8	57	Arabidopsis thaliana	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	30	Hordeum vulgare	HT13F16r_at	HT13F16r	-	-	7e-1	At5g24390	RabGAP/TBC domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os12g0513800	AK107995.1	-	Hypothetical protein	1e+1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	2e-12	73	Populus trichocarpa	PtpAffx.16274.1.S1_at	DN492205	hypothetical protein	-	4e-2	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	TaAffx.85132.1.S1_at	CA625331	-	-	3e+0	At2g04430	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	C.G.	S.X.	Please select
0.29	9e-20	95	Vitis vinifera	1609403_at	CF205431.1	hypothetical protein LOC100257937	-	7e-6	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.475.1.A1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage