Gene omics information

Query gene ID	GmaAffx.7558.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	92.6	GmaAffx.7558.1.S1_at	AW755882	-	-	2e-1	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.73818.1.S1_at	BG044238	-	-	9e-1	At5g59040	COPT3	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.66326.1.S1_at	BG882161	-	-	2e-97	At4g04910	NSF (N-ethylmaleimide sensitive factor)	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.64222.1.S1_at	BQ080654	-	-	1e-52	At5g50950	fumarate hydratase, putative / fumarase, putative	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.66558.1.S1_at	AW397829	-	-	4e-44	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.87706.1.S1_at	BM891727	-	-	3e-45	At4g33090	APM1 (AMINOPEPTIDASE M1)	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.4816.1.S1_at	BU579110	-	-	2e-17	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	S.X.	H.G.	Please select
0.21	26.6	Gma.8075.2.S1_s_at	BE352683	-	-	1e+0	At4g38090	unknown protein	S.X.	H.G.	Please select
0.17	21.2	Gma.9706.3.S1_a_at	AW133151	-	-	2e-5	At2g39840	TOPP4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	97.2	GSM293251	38_1201.1P.R124L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM244833	22_VP9.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.6	96.7	GSM292895	6_1455.1L.R278L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM244820	1_V71.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.4	96.4	GSM293401	84_C085.1Q.SLQ3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244906	3_CON.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM293238	26_1529.1P.R005L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292820	78_1421.1K.R260L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244922	6_CON.M3W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	38	GmaAffx.6588.1.S1_at	BE059787	-	-	1e+1	At5g24352	-	C.G.	S.X.	Please select
0.04	3e-1	36	PsAffx.psHB028xP24f_at	PsAffx.psHB028xP24f	-	-	4e-3	At1g68330	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C54000112_at	PsAffx.C54000112	-	-	3e-1	At5g20110	dynein light chain, putative	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C115000047_at	PsAffx.C115000047	-	-	4e-1	At2g05970	F-box family protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.66017.1.S1_s_at	AI495341	-	-	2e-1	At2g41230	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.17814.1.S1_at	AW349375	-	-	7e-3	At5g18290	SIP1	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C84000022_at	PsAffx.C84000022	-	-	2e+0	At4g14220	RHF1A (RING-H2 GROUP F1A)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C70000078_at	PsAffx.C70000078	-	-	2e+0	At1g65295	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C62000041_at	PsAffx.C62000041	-	-	4e-1	At1g49620	ICK5	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At5g59030	836020	COPT1 (copper transporter 1)	encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	38	Hordeum vulgare	Contig20479_at	Contig20479	-	-	1e+0	At1g22540	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.11943.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	1e-6	54	Populus trichocarpa	PtpAffx.106020.1.S1_s_at	BU875835	hypothetical protein	-	2e-5	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	TaAffx.78471.1.S1_at	CA732004	-	-	1e+0	At4g36430	peroxidase, putative	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1614847_x_at	CF201893.1	-	-	3e-4	At5g27670	HTA7 (HISTONE H2A 7)	C.G.	S.X.	Please select
0.04	2e-2	38	Zea mays	ZmAffx.461.1.S1_at	AI677289	-	-	8e-1	At3g23290	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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