Gene omics information

Query gene ID	GmaAffx.75246.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	GmaAffx.75246.1.S1_at	AW508335	-	-	2e-14	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.43012.1.S1_at	AW733354	-	-	1e-8	At2g35110	GRL (GNARLED)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.53227.1.S1_at	AW755412	-	-	2e+0	At5g15800	SEP1 (SEPALLATA1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.87850.1.S1_at	BU080614	-	-	6e-14	At5g47020	glycine-rich protein	S.X.	H.G.	Please select
0.38	53.3	Gma.1155.1.S1_at	BE805343	-	-	6e-6	At1g13750	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please select
0.24	30.9	Gma.13221.2.S1_at	BU082968	-	-	1e+0	At1g51390	NFU5	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.1	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.8	97.9	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.5	97.7	GSM244848	26_VP9.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.4	97.6	GSM293565	78_2006.2A.R146P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM244937	9_VP9.M2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.2	97.4	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293614	43_2066.2B.R129P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	GmaAffx.31364.1.S1_at	BF324641	-	-	3e+0	At3g22040	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.67375.1.A1_at	BE659769	-	-	6e+0	At3g59455	-	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.15237.1.S1_at	CB281757	-	-	4e+0	At2g46580	pyridoxine 5'-phosphate oxidase-related	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.92903.1.S1_at	CF808628	-	-	1e+0	At4g18425	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.46141.1.S1_at	BU549193	-	-	1e+0	At4g05060	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C6000161_at	PsAffx.C6000161	-	-	1e-1	At3g63210	MARD1	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C23000089_at	PsAffx.C23000089	-	-	7e+0	At5g64400	-	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C172000012_at	PsAffx.C172000012	-	-	3e+0	At2g36100	integral membrane family protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C117000022_at	PsAffx.C117000022	-	-	4e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-14	79	Arabidopsis thaliana	At1g60800	842374	NIK3 (NSP-INTERACTING KINASE 3)	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	34	Hordeum vulgare	HVSMEb0010O13f2_at	HVSMEb0010O13f2	-	-	3e+0	At5g44920	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os.7659.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	8e-18	91	Populus trichocarpa	PtpAffx.66890.1.S1_s_at	CX168640	hypothetical protein	-	2e-18	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-2	40	Triticum aestivum	Ta.4776.2.A1_at	BJ309962	BRI1-associated receptor kinase 1 protein	-	5e-6	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1609070_a_at	CF372037	hypothetical protein LOC100266501	-	1e+0	At5g55870	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	40	Zea mays	Zm.14026.1.S1_at	AY104736.1	hypothetical protein LOC100194188	-	4e-46	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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