Gene omics information

Query gene ID	GmaAffx.75107.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.75107.1.A1_at	CD410272	-	-	7e-1	At5g37240	unknown protein	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.11286.1.A1_at	AI442831	-	-	2e+0	At2g12935	unknown protein	S.X.	H.G.	Please select
0.08	11.0	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.88908.1.A1_x_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.99.2.A1_s_at	BE330213	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	S.X.	H.G.	Please select
0.00	1.4	GmaAffx.1991.1.S1_at	AW119827	-	-	1e-8	At5g47120	ATBI1 (BAX INHIBITOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
108.2	100.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.0	99.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.7	99.8	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
22.3	99.8	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
15.3	99.6	GSM292230	28_1045.1B.R025L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.3	99.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.0	99.5	GSM292182	42_1001.1A.R001L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8	99.5	GSM244896	37_VP9.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.7	99.5	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.5	99.5	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	HgAffx.17446.1.S1_at	CB278910	-	-	3e+0	At1g11180	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.05	2e-1	36	GmaAffx.67577.1.A1_at	BE824391	-	-	5e-14	At4g26620	sucrase-related	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C22000092_at	PsAffx.C22000092	-	-	2e+0	At5g66280	GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.64999.1.S1_at	BQ610148	-	-	3e-1	At3g28050	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.340.1.S1_at	AW350127	beta-glucosidase	-	1e-2	At5g49360	BXL1 (BETA-XYLOSIDASE 1)	C.G.	S.X.	Please select
0.04	1e+0	34	Gma.13409.1.S1_at	CD393829	-	-	2e-5	At2g28200	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please select
0.02	4e+0	32	PsAffx.C24000082_at	PsAffx.C24000082	-	-	3e+0	At5g63090	LOB (LATERAL ORGAN BOUNDARIES)	C.G.	S.X.	Please select
0.05	4e+0	32	HgAffx.537.1.A1_at	CK394501	-	-	4e-2	At4g15140	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	32	HgAffx.537.1.S1_at	CK394501	-	-	4e-2	At4g15140	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-1	34	Arabidopsis thaliana	At5g37240	833698	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-2	38	Hordeum vulgare	HW01N13u_at	HW01N13u	-	-	4e+0	At3g03840	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	5e+0	32	Oryza sativa	OsAffx.23875.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.58358.1.S1_at	CK107698	hypothetical protein	-	5e-15	At1g09160	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e+0	32	Triticum aestivum	TaAffx.111160.1.S1_at	CA646902	-	-	6e-1	At2g40880	ATCYSA (CYSTATIN A)	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1621830_at	CB979178	hypothetical protein LOC100248076	-	4e+0	At4g00840	zinc ion binding	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.9872.1.A1_at	BQ538232	hypothetical protein LOC100277709	-	1e+0	At1g62840	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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