Gene omics information

Query gene ID	GmaAffx.74485.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.2	GmaAffx.74485.1.A1_at	BU550283	-	-	7e-2	At3g09800	protein binding	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.62125.1.S1_at	AW395593	-	-	2e-1	At5g64770	unknown protein	S.X.	H.G.	Please select
0.56	78.2	HgAffx.18050.1.S1_at	CB238644	-	-	3e+0	At5g42504	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select
0.44	63.3	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.47834.1.A1_at	AF175392.1	-	-	3e-1	At4g16330	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.35	48.6	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.30	40.4	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.10787.1.S1_at	BU965232	-	-	1e-2	At5g16790	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
104.4	100.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.9	99.8	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.5	99.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.4	99.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.8	99.6	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.1	99.6	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
14.0	99.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.3	99.3	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
10.0	99.3	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.5	99.1	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	4e-87	321	Gma.2138.1.S1_at	AB040543.1	nonclathrin coat protein zeta2-COP	-	3e-2	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.50511.1.S1_at	BQ742950	-	-	6e+0	At5g25265	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.64103.1.A1_at	BI784901	ADP-ribosylation factor	-	3e-1	At2g44198	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Gma.12334.1.A1_s_at	BI702139	-	-	5e-5	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.02	6e+0	32	PsAffx.CL438Contig1_s_at	PsAffx.CL438Contig1	-	-	1e+1	At5g20190	binding	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.CL1713Contig1_at	PsAffx.CL1713Contig1	-	-	2e-2	At1g76940	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.CL1758Contig1_at	PsAffx.CL1758Contig1	-	-	2e-2	At5g54460	wound-responsive protein-related	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C7000192_at	PsAffx.C7000192	-	-	2e+0	At4g13020	MHK	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C71000033_s_at	PsAffx.C71000033	-	-	1e-1	At2g26140	ftsh4 (FtsH protease 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-2	38	Arabidopsis thaliana	At3g09800	820138	protein binding	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-3	42	Hordeum vulgare	Contig9541_at	Contig9541	-	-	4e-4	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os01g0853500	9629.m06273	-	-	1e+0	At5g54070	AT-HSFA9	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-5	50	Populus trichocarpa	PtpAffx.114670.1.A1_at	CV249440	-	-	1e-6	At1g60970	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-5	50	Triticum aestivum	Ta.7616.1.S1_s_at	CK156631	-	-	2e+0	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	C.G.	S.X.	Please select
0.11	4e-22	103	Vitis vinifera	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.808.1.A1_at	AI770390	-	-	8e-4	At2g40070	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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