CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.74229.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.74229.1.S1_at AW348139 - - 4e-1 At4g22890 PGR5-LIKE A S.X. H.G.
0.73 88.9 Gma.15311.2.S1_a_at BM520868 - - 5e+0 At4g24370 unknown protein S.X. H.G.
0.71 87.8 Gma.17989.2.S1_s_at BM953789 - - 5e+0 At5g53940 yippee family protein S.X. H.G.
0.71 87.8 GmaAffx.23763.1.S1_at BU579160 - - 8e-47 At5g65110 ACX2 (ACYL-COA OXIDASE 2) S.X. H.G.
0.71 87.8 Gma.15311.1.S1_at BE821873 - - 2e-3 At3g06850 BCE2 S.X. H.G.
0.67 86.1 Gma.3429.1.S1_at BI974673 - - 1e-12 At1g21400 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 99.5 GSM294007 5_3095.2F.R9F1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.2 99.5 GSM293080 7_C033.1N.R9N3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8 99.5 GSM292542 55_C135.1H.R9H2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.7 99.5 GSM292384 59_C093.1F.R9F1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.0 99.4 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7 99.4 GSM292793 53_C197.1K.R9K3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.5 99.4 GSM292292 39_C075.1E.R9E1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.4 99.4 GSM292730 75_C165.1J.R9J1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.3 99.4 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.8 99.4 GSM292240 49_C033.1B.R9B3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 2e-50 200 GmaAffx.11500.1.S1_at AI973637 - - 5e-2 At3g51100 unknown protein C.G. S.X.
0.07 4e-11 69 GmaAffx.73832.1.S1_at BM527476 - - 8e-1 At5g42620 metalloendopeptidase/ zinc ion binding C.G. S.X.
0.03 1e-1 38 GmaAffx.33458.1.A1_at BU550032 - - 1e+0 At5g62990 emb1692 (embryo defective 1692) C.G. S.X.
0.02 5e-1 36 PsAffx.C32000017_at PsAffx.C32000017 - - 5e-2 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 5e-1 36 GmaAffx.82683.1.S1_at BM307232 - - 3e-1 At5g47080 CKB1 C.G. S.X.
0.03 2e+0 34 PsAffx.psMA015xF16f_at PsAffx.psMA015xF16f - - 3e-1 At4g22890 PGR5-LIKE A C.G. S.X.
0.01 2e+0 34 PsAffx.C222000002_at PsAffx.C222000002 - - 6e-2 At1g30460 CPSF30 C.G. S.X.
0.03 2e+0 34 HgAffx.11365.1.S1_at CB935085 - - 2e+1 At3g61175 LCR52 (Low-molecular-weight cysteine-rich 52) C.G. S.X.
0.02 2e+0 34 GmaAffx.81592.1.S1_at BI699282 - - 2e-2 At3g14280 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At4g22890 828388 PGR5-LIKE A Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEa0006N15r2_s_at HVSMEa0006N15r2 - - 4e+0 At2g40765 unknown protein C.G. S.X.
0.02 7e-1 36 Oryza sativa Os.38196.1.A1_at - - - 0 C.G. S.X.
0.04 5e-1 36 Populus trichocarpa PtpAffx.21966.1.A1_at CV269244 sodium-dicarboxylate cotransporter - 8e-15 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.86982.1.S1_at CA597710 - - 1e+0 At3g55140 pectate lyase family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614343_at CF403691 hypothetical protein LOC100267291 - 3e+0 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.18805.1.A1_at CO526380 indole-3-acetate beta-glucosyltransferase - 1e-1 At3g16020 phospholipase C C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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