CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.73446.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.73446.1.S1_at BI975017 - - 3e+0 At5g05910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.25 32.6 Gma.10051.2.S1_at AW508986 - - 2e-9 At4g11790 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein S.X. H.G.
0.19 23.7 GmaAffx.87924.1.S1_at AW596893 - - 9e-39 At3g05000 transport protein particle (TRAPP) component Bet3 family protein S.X. H.G.
0.17 21.2 Gma.9743.1.S1_at CB063532 - - 8e-8 At5g61970 signal recognition particle-related / SRP-related S.X. H.G.
0.15 18.7 GmaAffx.34172.1.S1_s_at BF070551 - - 5e-18 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein S.X. H.G.
0.04 7.0 GmaAffx.1301.10.A1_at CD399388 - - 4e-7 At2g14860 peroxisomal membrane protein 22 kDa, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.6 GSM258496 Vegetative soybean shoot apical meristem GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
13.9 99.6 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.2 99.3 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
8.6 99.1 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
8.4 99.1 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
8.3 99.1 GSM258498 Soybean shoot apical meristem, 2 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
7.8 99.0 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
6.5 98.7 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.5 98.7 GSM293094 10_C048.1O.R9O2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2 98.6 GSM292886 61_1483.1L.R292U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Gma.17361.1.S1_at AW597830 - - 6e-2 At1g36942 unknown protein C.G. S.X.
0.03 3e-1 36 GmaAffx.63161.1.S1_at BM309583 - - 8e-5 At2g45430 DNA-binding protein-related C.G. S.X.
0.03 1e+0 34 GmaAffx.89543.1.A1_at CK606499 - - 2e+0 At4g32480 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.89543.1.S1_at CK606499 - - 2e+0 At4g32480 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.40475.1.S1_at BQ298439 - - 5e+0 At4g26780 AR192 C.G. S.X.
0.01 5e+0 32 PsAffx.C7000199_at PsAffx.C7000199 - - 6e+0 At5g04853 unknown protein C.G. S.X.
0.01 5e+0 32 PsAffx.C30000067_at PsAffx.C30000067 - - 3e-1 At1g12440 zinc finger (AN1-like) family protein C.G. S.X.
0.01 5e+0 32 PsAffx.C112000034_at PsAffx.C112000034 - - 2e+0 At5g25080 - C.G. S.X.
0.01 5e+0 32 PsAffx.C105000038_at PsAffx.C105000038 - - 2e+0 At4g02090 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At5g05910 830476 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HB01M17r_s_at HB01M17r - - 1e+0 At2g20950 - C.G. S.X.
0.05 4e-1 36 Oryza sativa OsAffx.31298.1.S1_at - - - 0 C.G. S.X.
0.05 8e-2 38 Populus trichocarpa PtpAffx.214802.1.S1_x_at pmrna28653 hypothetical protein - 2e-1 At5g63460 SAP domain-containing protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.82078.1.S1_at CA677902 - - 4e+0 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.06 1e+0 32 Vitis vinifera 1609498_s_at CD801050 hypothetical protein LOC100242198 - 4e+0 At5g52270 vesicle transport protein-related C.G. S.X.
0.03 1e-1 36 Zea mays Zm.879.1.A1_at BM379556 hypothetical protein LOC100276616 - 7e+0 At5g35300 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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