Gene omics information

Query gene ID	GmaAffx.72637.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.72637.1.S1_at	BG316131	-	-	9e-8	At3g50660	DWF4 (DWARF 4)	S.X.	H.G.	Please select
0.25	32.6	Gma.11223.1.S1_at	BG839304	-	-	4e-169	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.07	10.2	Gma.1440.1.A1_at	AW349112	-	-	1e+0	At1g28450	AGL58 (AGAMOUS-LIKE 58)	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.65990.1.S1_at	AI443113	-	-	1e-4	At3g52610	unknown protein	S.X.	H.G.	Please select
0.02	4.5	Gma.1696.1.S1_a_at	CD404329	-	-	4e-33	At4g35220	cyclase family protein	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.92468.1.S1_at	CF808193	-	-	7e-15	At5g57050	ABI2 (ABA INSENSITIVE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.9	GSM293362	49_C075.1Q.R9Q1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM294445	14_2489.2K.R008U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM294257	17_3149.2I.SLI1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM294320	6_3151.2I.SLI2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294409	66_3169.2J.R9J2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294645	19_3233.2M.R9M3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM293378	63_C077.1Q.SLQ1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM294243	91_3137.2H.R9H2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM293087	86_1075.1N.R045U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM294413	6_3177.2J.R9J3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-3	42	Gma.13864.1.A1_at	CD408281	-	-	7e-1	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.04	3e-2	40	GmaAffx.58043.1.S1_at	BE191045	-	-	2e-4	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.06	4e-1	36	GmaAffx.74065.1.S1_at	BQ295944	-	-	7e-27	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C173000036_at	PsAffx.C173000036	-	-	3e-4	At2g40560	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C144000034_at	PsAffx.C144000034	-	-	7e-1	Atmg00516	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.67459.1.S1_at	AW733922	-	-	2e-2	At2g44870	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.61462.2.A1_at	CD406462	-	-	7e-1	At5g14410	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.44444.1.S1_at	BE347826	-	-	8e-1	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.15189.1.S1_at	BM086384	-	-	3e+0	At5g38060	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	9e-8	57	Arabidopsis thaliana	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-3	42	Hordeum vulgare	Contig23128_at	Contig23128	-	-	5e-1	At1g10140	-	C.G.	S.X.	Please select
0.09	6e-1	36	Oryza sativa	Os03g0227700	9631.m01191	-	Steroid 22-alpha-hydroxylase	5e-2	At1g70470	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	2e-74	280	Populus trichocarpa	Ptp.7196.1.S1_at	CV280598	cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone /// hypothetical protein	-	3e-22	At3g50660	DWF4 (DWARF 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.79923.1.S1_at	CA705950	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1620533_at	CB839478	-	-	3e-1	At5g48950	thioesterase family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.9099.1.A1_at	BM266558	-	-	1e+0	At3g08010	ATAB2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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