Gene omics information

Query gene ID	GmaAffx.72561.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.72561.2.S1_at	BG155858	-	-	2e-10	At4g17310	unknown protein	S.X.	H.G.	Please select
0.63	82.9	Gma.11173.1.S1_x_at	CD399794	-	-	6e-9	At3g49910	60S ribosomal protein L26 (RPL26A)	S.X.	H.G.	Please select
0.62	82.1	GmaAffx.89095.1.S1_s_at	CK605629	-	-	7e-46	At5g20290	40S ribosomal protein S8 (RPS8A)	S.X.	H.G.	Please select
0.58	78.8	GmaAffx.89930.1.S1_s_at	CF805655	-	-	2e-26	At3g59540	60S ribosomal protein L38 (RPL38B)	S.X.	H.G.	Please select
0.58	78.8	Gma.10596.1.S1_at	CD399436	-	-	4e-44	At3g59540	60S ribosomal protein L38 (RPL38B)	S.X.	H.G.	Please select
0.57	78.8	Gma.11290.1.S1_x_at	CD390917	-	-	1e-40	At3g53430	60S ribosomal protein L12 (RPL12B)	S.X.	H.G.	Please select
0.57	78.8	Gma.5688.1.S1_at	AW568434	-	-	8e-28	At3g57490	40S ribosomal protein S2 (RPS2D)	S.X.	H.G.	Please select
0.57	78.8	Gma.6820.1.S1_at	AI416867	-	-	1e-13	At1g03860	ATPHB2 (PROHIBITIN 2)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.8692.2.S1_at	AW133381	-	-	4e-19	At4g22000	unknown protein	S.X.	H.G.	Please select
0.57	78.8	Gma.6404.1.S1_at	BQ611306	-	-	1e-7	At2g32060	40S ribosomal protein S12 (RPS12C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.4	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.6	99.2	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.6	99.2	GSM293566	79_2005.2A.R146L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.7	99.1	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
8.6	99.1	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.3	99.1	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
8.2	99.0	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
7.9	99.0	GSM293123	37_1111.1O.R071U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
7.5	98.9	GSM293148	5_1147.1O.R093U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-49	196	GmaAffx.72561.1.S1_at	BE820320	-	-	3e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.02	7e-2	38	PsAffx.C181000018_s_at	PsAffx.C181000018	-	-	3e+0	At1g49310	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	PsAffx.C127000017_at	PsAffx.C127000017	-	-	4e+0	At4g29658	PRA1.C (PRENYLATED RAB ACCEPTOR 1.C)	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C15000069_at	PsAffx.C15000069	-	-	2e-2	At1g55530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C1000310_at	PsAffx.C1000310	-	-	2e+0	At4g25850	ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B)	C.G.	S.X.	Please select
0.00	1e+0	34	PsAffx.C90000032_at	PsAffx.C90000032	-	-	1e+0	At4g17950	DNA-binding family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C57000009_at	PsAffx.C57000009	-	-	1e-1	At3g05741	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C19000077_at	PsAffx.C19000077	-	-	2e-1	At1g26945	KDR (KIDARI)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C19000072_at	PsAffx.C19000072	-	-	6e-1	At5g10300	MES5 (METHYL ESTERASE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-10	65	Arabidopsis thaliana	At4g17310	827444	unknown protein	F:unknown;P:unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-3	42	Hordeum vulgare	Contig22648_at	Contig22648	-	-	6e-8	At4g17310	unknown protein	C.G.	S.X.	Please select
0.09	1e-10	67	Oryza sativa	OsAffx.24715.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	3e-4	46	Populus trichocarpa	PtpAffx.25638.1.S1_a_at	CV244998	hypothetical protein	-	4e-16	At4g17310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-8	59	Triticum aestivum	TaAffx.57652.1.S1_at	CA626274	-	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1620053_at	CF372394	hypothetical protein LOC100245511	-	3e-10	At4g22930	PYR4 (PYRIMIDIN 4)	C.G.	S.X.	Please select
0.09	6e-9	59	Zea mays	Zm.17347.1.S1_at	CK370714	hypothetical protein LOC100217009	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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