Gene omics information

Query gene ID	GmaAffx.72129.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.72129.1.S1_at	BE806728	-	-	1e-14	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.44	63.3	PsAffx.C190000010_at	PsAffx.C190000010	-	-	3e+0	At2g18010	auxin-responsive family protein	S.X.	H.G.	Please select
0.08	11.0	HgAffx.19265.1.S1_at	CA939915	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	S.X.	H.G.	Please select
0.07	10.2	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	S.X.	H.G.	Please select
0.07	10.2	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.01	3.4	HgAffx.9007.1.A1_at	CB379494	-	-	3e-1	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
136.5	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
52.4	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.3	99.9	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
30.8	99.9	GSM244856	28_V71.I1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
27.9	99.8	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
27.0	99.8	GSM292167	21-1019.1A.R011L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.3	99.8	GSM293109	24_1143.1O.R091U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.5	99.8	GSM244798	15_CON.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
22.3	99.8	GSM171620	15_Y.C.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
22.0	99.8	GSM171598	10_V.C.I.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-49	196	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.22	1e-49	196	GmaAffx.91170.1.S1_s_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.13	8e-48	190	Gma.14354.1.S1_x_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.13	8e-48	190	Gma.14354.1.S1_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.12	3e-38	159	Gma.11282.1.S1_at	AI443415	-	-	2e-62	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.17	1e-37	157	GmaAffx.93385.1.S1_x_at	CF806095	-	-	1e-68	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.17	1e-37	157	GmaAffx.93385.1.S1_at	CF806095	-	-	1e-68	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.11	2e-23	109	Gma.5641.1.S1_at	AW349077	-	-	1e-82	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.11	2e-20	99	Gma.14354.2.S1_at	BI472159	-	-	3e-53	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-14	79	Arabidopsis thaliana	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	4e-13	73	Hordeum vulgare	HI01O12w_at	HI01O12w	-	-	3e-29	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.12	3e-8	59	Oryza sativa	Os.12233.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-23	109	Populus trichocarpa	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	9e-10	63	Triticum aestivum	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	C.G.	S.X.	Please select
0.15	4e-9	59	Vitis vinifera	1622781_a_at	CF214778	hypothetical protein LOC100252992	-	1e-46	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please select
0.07	9e-5	46	Zea mays	Zm.2593.1.S1_at	CA403212	ras-related protein ARA-3	-	5e-54	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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