Gene omics information

Query gene ID	GmaAffx.72103.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.72103.1.S1_at	BE805644	-	-	1e-15	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.15426.3.S1_at	BQ081124	-	-	5e-3	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.15426.2.S1_at	BG155799	-	-	2e+0	At1g64980	unknown protein	S.X.	H.G.	Please select
0.40	57.1	Gma.7153.2.S1_at	BU579274	-	-	5e-30	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.76766.1.S1_at	BF716189	-	-	2e-21	At2g33340	nucleotide binding / ubiquitin-protein ligase	S.X.	H.G.	Please select
0.02	4.5	Gma.14354.2.S1_at	BI472159	-	-	3e-53	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.7	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
7.9	99.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.9	98.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.1	98.5	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.6	98.3	GSM293491	10_3002.2A.SLA1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.0	98.0	GSM294277	30_3152.2I.SLI2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294289	41_3149.2I.SLI1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.8	97.9	GSM293357	44_C081.1Q.SLQ2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-22	105	Gma.15426.3.S1_at	BQ081124	-	-	5e-3	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C22000077_at	PsAffx.C22000077	-	-	2e+0	At1g29760	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.84809.1.S1_at	AW459462	-	-	1e-3	At2g25737	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.45904.1.A1_at	BU550761	-	-	4e-1	At5g48610	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.29360.1.S1_at	CA935299	-	-	8e-1	At3g04460	PEX12	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.29360.1.S1_s_at	CA935299	-	-	8e-1	At3g04460	PEX12	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.3813.1.S1_at	BG352196	-	-	4e+0	At3g21350	RNA polymerase transcriptional regulation mediator-related	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.15110.1.S1_at	CD416313	-	-	2e-33	At2g38120	AUX1 (AUXIN RESISTANT 1)	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.13227.1.A1_at	BE610302	-	-	1e+0	At4g18620	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-15	83	Arabidopsis thaliana	At4g37210	829875	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-3	42	Hordeum vulgare	Contig8194_at	Contig8194	-	-	2e-7	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os.46326.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.162022.1.A1_at	CK088502	-	-	3e+0	At5g12060	self-incompatibility protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.58891.1.S1_at	CA613184	-	-	1e+1	At5g28919	-	C.G.	S.X.	Please select
0.06	3e-7	54	Vitis vinifera	1615876_at	CF513558	hypothetical protein LOC100248980	-	4e-12	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.3781.1.S1_at	CD447284	syntaxin 132	-	3e-4	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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