Gene omics information

Query gene ID	GmaAffx.71735.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.71735.1.S1_at	BI973751	-	-	4e-7	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.49577.1.S1_at	BU549109	-	-	4e-20	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.18005.1.S1_at	BU765846	-	-	2e-13	At4g27630	GTG2 (GPCR-TYPE G PROTEIN 2)	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.71299.1.S1_at	AW569361	-	-	2e-17	At4g34910	DEAD/DEAH box helicase, putative (RH16)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.74113.1.S1_at	BQ452560	-	-	2e-4	At2g02860	SUT2 (SUCROSE TRANSPORTER 2)	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.56943.1.S1_at	AW185138	-	-	1e+0	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.45437.1.S1_at	AI960629	biotin synthase	-	7e-21	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.54917.1.S1_at	AW666047	-	-	5e+0	At5g43440	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.89191.1.A1_x_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	S.X.	H.G.	Please select
0.23	29.9	Gma.10160.1.S1_at	AW309425	-	-	2e-2	At3g48209	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.7	GSM294425	80_3168.2J.R9J1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.3	96.2	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM294422	78_2467.2J.R216U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	PsAffx.C56000002_at	PsAffx.C56000002	-	-	8e-1	At5g62320	ATMYB99 (MYB DOMAIN PROTEIN 99)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C101000050_at	PsAffx.C101000050	-	-	2e-1	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL842Contig1_at	PsAffx.CL842Contig1	-	-	2e+0	At3g07930	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL356Contig1_at	PsAffx.CL356Contig1	-	-	2e+0	At5g11070	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C59000048_at	PsAffx.C59000048	-	-	1e-1	At3g47120	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.3280.1.A1_at	CK349410	-	-	1e+1	At3g44430	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.3280.1.S1_at	CK349410	-	-	1e+1	At3g44430	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.9102.1.S1_at	BI971064	-	-	6e-2	Atcg00790	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.86305.1.S1_at	BG363201	-	-	2e-1	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-7	56	Arabidopsis thaliana	At2g45240	819132	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	HW01L24u_at	HW01L24u	-	-	3e+0	At2g35820	unknown protein	C.G.	S.X.	Please select
0.06	1e-2	42	Oryza sativa	Os10g0508400	AK066207.1	-	-	1e-8	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+0	34	Populus trichocarpa	PtpAffx.221924.1.S1_at	pmrna39042	hypothetical protein	-	2e+0	At5g63530	ATFP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-3	44	Triticum aestivum	TaAffx.81113.1.S1_s_at	CA689395	-	-	4e+0	At5g54190	PORA	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619412_at	CB342923	-	-	2e+0	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zea mays	Zm.16004.1.A1_a_at	CO533006	hypothetical protein LOC100274208 /// methionine aminopeptidase 1A	-	4e-21	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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