Gene omics information

Query gene ID	GmaAffx.71421.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	78.8	GmaAffx.71421.1.S1_at	AW706936	-	-	4e-21	At2g14210	AGL44 (AGAMOUS-LIKE 44)	S.X.	H.G.	Please select
0.56	78.2	Gma.6645.1.S1_at	BQ629174	-	-	1e-1	At1g59865	unknown protein	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.15816.1.A1_at	CD409822	-	-	4e+0	At3g13882	structural constituent of ribosome	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.58795.1.S1_at	BG238021	-	-	6e-9	At4g33790	CER4 (ECERIFERUM 4)	S.X.	H.G.	Please select
0.50	71.7	Gma.5273.1.S1_s_at	AI965477	-	-	3e+0	At5g49600	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.87086.1.S1_at	BM091829	-	-	2e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	S.X.	H.G.	Please select
0.48	67.7	Gma.6156.1.S1_at	BQ611827	WRKY64 protein	-	2e-9	At5g41570	WRKY24	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.16632.1.S1_at	AW598371	-	-	1e-1	At1g21340	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	Gma.9783.1.S1_at	CA935893	-	-	3e-6	At2g23540	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.39	54.5	GmaAffx.85946.1.S1_at	BU084846	-	-	2e-1	At4g33610	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.2	99.9	GSM292450	50_1278.1G.R176P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.5	99.7	GSM293818	5_2155.2D.R099L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.7	99.7	GSM293683	21_2103.2C.R086L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.4	99.7	GSM293790	34_2150.2D.R295P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.6	99.6	GSM293892	42_2212.2E.R101P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.2	99.6	GSM292898	72_1476.1L.R288P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.1	99.6	GSM294434	89_2444.2J.R083P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.1	99.6	GSM294395	53_2460.2J.R291P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.5	99.6	GSM292536	4_1320.1H.R201P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.9	99.6	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	PsAffx.C12000069_at	PsAffx.C12000069	-	-	2e-2	At1g67670	unknown protein	C.G.	S.X.	Please select
0.06	3e-1	36	GmaAffx.53018.1.S1_at	AW471840	-	-	2e+0	At5g56480	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C57000075_at	PsAffx.C57000075	-	-	2e-1	At5g03570	ATIREG2 (IRON-REGULATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C5000189_at	PsAffx.C5000189	-	-	1e+0	At4g10895	Expressed protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C180000031_at	PsAffx.C180000031	-	-	8e-1	At5g19151	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.12445.1.S1_at	CB375537	-	-	4e+0	At5g41920	scarecrow transcription factor family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.81253.1.S1_at	BE807371	-	-	4e-7	At1g01110	IQD18 (IQ-domain 18)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.21316.1.S1_at	AW706789	-	-	1e+1	Atcg00640	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	4e-21	101	Arabidopsis thaliana	At2g14210	815907	AGL44 (AGAMOUS-LIKE 44)	MADS box gene, transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	34	Hordeum vulgare	Contig4808_s_at	Contig4808	-	-	2e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.13	3e-2	40	Oryza sativa	Os08g0431900	AY345220.1	-	Transcription factor MADS23	6e-6	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	3e-16	85	Populus trichocarpa	PtpAffx.204772.1.S1_at	pmrna9397	hypothetical protein	-	1e-25	At2g14210	AGL44 (AGAMOUS-LIKE 44)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.29544.1.S1_at	CA640590	-	-	2e+0	At4g02090	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1617233_at	CF604441	hypothetical protein LOC100266540	-	1e+0	At3g18710	PUB29 (PLANT U-BOX 29)	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	Zm.335.1.S1_a_at	BM078498	Zea mays MADS16	-	3e-2	At3g57390	AGL18	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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