CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.71343.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 98.9 GmaAffx.71343.1.S1_at BE555273 - - 1e-16 At5g38880 unknown protein S.X. H.G.
0.39 54.5 Gma.5747.2.S1_at BI498317 - - 2e-12 At1g48410 AGO1 (ARGONAUTE 1) S.X. H.G.
0.35 48.6 Gma.11099.1.S1_at BE473645 - - 2e-5 At3g56120 Met-10+ like family protein S.X. H.G.
0.34 47.2 GmaAffx.50885.1.A1_at BU547477 - - 3e-1 At1g48630 RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) S.X. H.G.
0.31 42.2 GmaAffx.76633.1.S1_at AW396184 - - 1e-7 At4g30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related S.X. H.G.
0.30 40.4 Gma.13221.1.A1_at BE819862 - - 6e+0 At5g52140 protein binding / zinc ion binding S.X. H.G.
0.29 39.0 GmaAffx.86607.1.S1_at BE824381 - - 1e-54 At2g17510 EMB2763 (EMBRYO DEFECTIVE 2763) S.X. H.G.
0.28 39.0 Gma.12088.1.S1_s_at BG508802 - - 2e-21 At3g18210 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.26 33.9 GmaAffx.59321.1.S1_at BI974317 - - 1e+0 At2g30990 unknown protein S.X. H.G.
0.26 33.9 Gma.1373.2.A1_s_at BI968510 - - 6e-25 At2g26770 plectin-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.1 99.6 GSM292221 15_C026.1B.SLB2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.7 99.0 GSM258498 Soybean shoot apical meristem, 2 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.9 98.8 GSM292279 23_C078.1E.SLE1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9 98.8 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.7 98.7 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.2 98.6 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
6.0 98.5 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.7 98.4 GSM293952 9_3078.2E.SLE1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.4 98.2 GSM258501 Soybean shoot apical meristem, 1 short-day treatment replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 36 Gma.158.1.S1_at AF020193.1 DNA polymerase delta - 4e-168 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) C.G. S.X.
0.03 5e-1 36 Gma.15680.1.S1_at CD416439 - - 4e+0 At4g18372 small nuclear ribonucleoprotein-related / snRNP-related C.G. S.X.
0.01 8e+0 32 PsAffx.C323000002_at PsAffx.C323000002 - - 2e+0 At5g23411 unknown protein C.G. S.X.
0.01 8e+0 32 PsAffx.C27000032_at PsAffx.C27000032 - - 7e-1 At1g02930 ATGSTF6 (GLUTATHIONE S-TRANSFERASE) C.G. S.X.
0.01 8e+0 32 PsAffx.C123000021_at PsAffx.C123000021 - - 5e+0 At5g58782 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative C.G. S.X.
0.01 8e+0 32 PsAffx.C123000021_s_at PsAffx.C123000021 - - 5e+0 At5g58782 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative C.G. S.X.
0.01 8e+0 32 PsAffx.C10000138_at PsAffx.C10000138 - - 4e-3 At1g73620 thaumatin-like protein, putative / pathogenesis-related protein, putative C.G. S.X.
0.03 8e+0 32 GmaAffx.88296.1.S1_at CA784295 - - 9e-1 At5g42030 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) C.G. S.X.
0.02 8e+0 32 GmaAffx.73783.1.S1_at BM524779 - - 3e-4 At1g53120 RNA-binding S4 domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-16 87 Arabidopsis thaliana At5g38880 833879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA - - - C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig8700_s_at Contig8700 - - 1e+0 At5g01790 unknown protein C.G. S.X.
0.08 1e-2 42 Oryza sativa Os.52006.1.S1_at - - - 0 C.G. S.X.
0.22 9e-49 194 Populus trichocarpa PtpAffx.217308.1.S1_at pmrna32511 hypothetical protein - 1e-65 At5g38880 unknown protein C.G. S.X.
0.12 2e+0 34 Triticum aestivum TaAffx.86893.1.S1_at CA599324 - - 5e-12 At5g38880 unknown protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1620707_at CB346387 - - 4e+0 At3g23172 unknown protein C.G. S.X.
0.06 3e-3 42 Zea mays Zm.14700.2.A1_at CA400324 - - 5e-1 At2g19630 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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