Gene omics information

Query gene ID	GmaAffx.71293.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	78.8	GmaAffx.71293.1.S1_s_at	AW569180	-	-	3e+0	At1g35255	unknown protein	S.X.	H.G.	Please select
0.55	76.3	Gma.6593.2.S1_at	CF923087	-	-	7e-2	At1g53580	GLY3 (GLYOXALASE II 3)	S.X.	H.G.	Please select
0.43	60.6	Gma.2831.1.S1_s_at	AW349413	-	-	1e-8	At1g66140	ZFP4 (ZINC FINGER PROTEIN 4)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.93131.1.S1_s_at	CF807895	-	-	3e-2	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	S.X.	H.G.	Please select
0.31	42.2	Gma.2677.1.S1_s_at	CA937161	-	-	8e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	S.X.	H.G.	Please select
0.27	35.7	Gma.593.1.S1_x_at	AW351331	MYB transcription factor MYB176	-	1e-11	At1g74840	myb family transcription factor	S.X.	H.G.	Please select
0.26	33.9	Gma.10975.2.S1_s_at	BQ743096	-	-	5e-6	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.9	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM292393	69_C106.1F.SLF3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292175	30-C012.1A.SLA2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM292800	5_1436.1K.R267P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293855	93_2192.2D.R107P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8	97.9	GSM293127	40_1148.1O.R093P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292377	50_1228.1F.R139P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	1e-166	585	Gma.6246.1.S1_at	AW348532	-	-	3e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C73000036_at	PsAffx.C73000036	-	-	6e-1	At3g03760	LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.41122.1.S1_at	BI321747	-	-	9e-20	At1g10865	-	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C59000022_at	PsAffx.C59000022	-	-	2e+0	At1g09245	-	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C1000136_at	PsAffx.C1000136	-	-	2e+0	At5g54585	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C1000131_at	PsAffx.C1000131	-	-	1e-1	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.04	4e+0	32	GmaAffx.82262.1.S1_at	BI786890	-	-	3e-28	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	C.G.	S.X.	Please select
0.04	4e+0	32	GmaAffx.75380.1.S1_at	AI988078	-	-	4e-6	At1g17230	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	4e+0	32	GmaAffx.4765.1.S1_at	BU548866	-	-	1e-14	At3g02060	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At1g35255	5007768	unknown protein	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e+0	30	Hordeum vulgare	Contig23431_at	Contig23431	-	-	2e+0	At4g21865	unknown protein	C.G.	S.X.	Please select
0.06	5e+0	32	Oryza sativa	OsAffx.15490.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	44	Populus trichocarpa	PtpAffx.144670.1.S1_at	DN502072	hypothetical protein	-	1e+0	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	34	Triticum aestivum	TaAffx.86871.1.S1_at	CA599570	-	-	4e+0	At5g26848	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1613388_at	CF568873	-	-	1e-9	At4g25370	Clp amino terminal domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.3539.1.S1_at	AW324635	-	-	6e+0	At2g04430	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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