Gene omics information

Query gene ID	GmaAffx.69683.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	92.8	GmaAffx.69683.1.S1_at	CA799656	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	S.X.	H.G.	Please select
0.87	93.2	Gma.7906.1.S1_at	BF716040	-	-	7e-9	At1g63610	unknown protein	S.X.	H.G.	Please select
0.76	89.7	Gma.13877.1.A1_at	BI967630	-	-	2e-27	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.81837.1.S1_at	CD410469	-	-	5e-81	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	S.X.	H.G.	Please select
0.67	86.1	Gma.10852.3.S1_at	CD408303	-	-	7e-10	At4g25370	Clp amino terminal domain-containing protein	S.X.	H.G.	Please select
0.67	86.1	Gma.16456.1.A1_at	BE823704	-	-	2e-4	At3g28970	AAR3 (antiauxin-resistant 3)	S.X.	H.G.	Please select
0.64	83.4	Gma.6940.1.A1_at	CA784222	-	-	5e+0	At2g39320	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.7497.1.S1_at	CD393659	OAS-TL4 cysteine synthase (OAS-TL4)	-	7e-60	At2g43750	OASB (O-ACETYLSERINE (THIOL) LYASE B)	S.X.	H.G.	Please select
0.61	81.8	Gma.5276.1.S1_at	BM731770	-	-	8e-36	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	S.X.	H.G.	Please select
0.60	80.7	Gma.7276.1.S1_at	CD394605	-	-	2e-31	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.8	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
22.0	99.8	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
21.8	99.8	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
21.1	99.7	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
19.9	99.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
18.8	99.7	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
18.5	99.7	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
18.1	99.7	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
17.1	99.7	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
16.2	99.6	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.00	1e-1	38	PsAffx.C8000147_at	PsAffx.C8000147	-	-	3e-1	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C69000039_at	PsAffx.C69000039	-	-	2e+0	At5g51650	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.93438.1.S1_x_at	CF809163	-	-	2e-70	At4g14960	TUA6	C.G.	S.X.	Please select
0.02	6e-1	36	HgAffx.23972.1.S1_at	CD749126	-	-	5e+0	At4g04800	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.03	6e-1	36	GmaAffx.30570.1.S1_at	AW781385	-	-	3e+0	At4g00165	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	6e-1	36	Gma.10592.1.S1_at	BG838982	-	-	3e-11	At5g42310	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL118Contig1_at	PsAffx.CL118Contig1	-	-	7e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C7000177_at	PsAffx.C7000177	-	-	9e-1	At5g03230	unknown protein	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C26000067_at	PsAffx.C26000067	-	-	5e-3	At5g23720	PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-9	61	Arabidopsis thaliana	At5g17790	831647	VAR3 (VARIEGATED 3)	Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	Contig11009_at	Contig11009	-	-	9e-15	At1g50410	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please select
0.04	5e-5	50	Oryza sativa	Os01g0815700	AK073519.1	-	Zn-finger, Ran-binding domain containing protein	5e-10	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	9e-34	145	Populus trichocarpa	Ptp.1746.1.A1_at	CV236183	hypothetical protein	-	2e+0	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-1	38	Triticum aestivum	TaAffx.83761.1.S1_at	CA651758	-	-	2e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	C.G.	S.X.	Please select
0.25	3e-33	141	Vitis vinifera	1617399_at	CB342525	hypothetical protein LOC100262132	-	5e-21	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.18789.1.S1_at	CO525842	hypothetical protein LOC100272429	-	4e+0	At1g30475	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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