Gene omics information

Query gene ID	GmaAffx.69088.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.6	GmaAffx.69088.1.S1_s_at	BM309549	-	-	2e-20	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	S.X.	H.G.	Please select
0.28	39.0	Gma.10652.1.S1_at	CF922946	-	-	1e-13	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	S.X.	H.G.	Please select
0.22	28.1	Gma.5864.1.S1_at	BF067737	-	-	1e-10	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.79184.1.S1_at	BQ473675	-	-	6e-84	At3g57880	C2 domain-containing protein	S.X.	H.G.	Please select
0.17	21.2	Gma.15978.1.S1_at	BM092427	-	-	5e-4	At3g18580	single-strand-binding family protein	S.X.	H.G.	Please select
0.16	19.7	GmaAffx.89930.1.S1_s_at	CF805655	-	-	2e-26	At3g59540	60S ribosomal protein L38 (RPL38B)	S.X.	H.G.	Please select
0.15	18.7	Gma.7866.1.S1_at	BU550728	-	-	3e-8	At2g44065	ribosomal protein L2 family protein	S.X.	H.G.	Please select
0.14	17.5	Gma.9251.1.S1_at	CD416654	-	-	1e-25	At3g16060	kinesin motor family protein	S.X.	H.G.	Please select
0.13	16.3	Gma.10357.1.S1_at	CD409912	-	-	8e-28	At3g03960	chaperonin, putative	S.X.	H.G.	Please select
0.13	16.3	Gma.16912.1.S1_at	CD408963	-	-	6e+0	At4g02360	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.0	99.9	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
32.3	99.9	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
21.6	99.8	GSM209575	susceptible_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
21.2	99.7	GSM209574	resistant_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
17.4	99.7	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
17.2	99.7	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
15.6	99.6	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
13.5	99.5	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
13.4	99.5	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.8	99.5	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Gma.4432.1.S1_a_at	BQ610841	-	-	2e-4	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C8000069_at	PsAffx.C8000069	-	-	3e-2	At2g17870	cold-shock DNA-binding family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C146000020_at	PsAffx.C146000020	-	-	1e-2	At4g39870	-	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.91186.1.S1_at	CF806911	-	-	4e+0	At5g10050	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.91186.1.S1_s_at	CF806911	-	-	4e+0	At5g10050	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.04	5e+0	32	GmaAffx.88176.1.S1_at	BU764104	-	-	6e-8	At3g45190	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.02	5e+0	32	GmaAffx.8472.1.S1_at	AW350979	-	-	2e-40	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.81399.1.S1_at	AW568772	-	-	2e+0	At5g35100	peptidyl-prolyl cis-trans isomerase	C.G.	S.X.	Please select
0.04	5e+0	32	GmaAffx.56355.1.S1_at	BU926126	-	-	6e-2	At2g01310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	2e-20	99	Arabidopsis thaliana	At1g10030	837538	ERG28 (Arabidopsis homolog of yeast ergosterol28)	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	7e-9	59	Hordeum vulgare	Contig15794_at	Contig15794	-	-	2e-15	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	C.G.	S.X.	Please select
0.21	1e-4	48	Oryza sativa	Os12g0633200	AK100870.1	-	Protein of unknown function UPF0143 family protein	1e+0	At3g18700	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	1e-34	147	Populus trichocarpa	Ptp.4419.1.S1_at	CV255919	hypothetical protein	-	2e-40	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-3	44	Triticum aestivum	TaAffx.85093.1.S1_at	CA622968	-	-	1e+0	At4g32260	ATP synthase family	C.G.	S.X.	Please select
0.50	4e-40	163	Vitis vinifera	1615948_at	CA814177	hypothetical protein LOC100250651	-	6e-37	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	C.G.	S.X.	Please select
0.12	1e-4	46	Zea mays	Zm.4471.4.A1_at	AI948350	erg28 like protein	-	5e-4	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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