CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.68425.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.68425.1.S1_at BI425905 - - 1e-35 At3g57650 LPAT2 S.X. H.G.
0.73 88.9 GmaAffx.29121.1.S1_at BU762958 - - 1e+0 At4g17310 unknown protein S.X. H.G.
0.67 86.1 GmaAffx.58610.1.S1_at BF066199 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) S.X. H.G.
0.67 86.1 GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
0.53 74.2 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) S.X. H.G.
0.40 57.1 GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 97.6 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7 96.8 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3 96.2 GSM293260 46_1242.1P.R148P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293526 42_2022.2A.R275P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.0 95.6 GSM293534 4_3006.2A.R9A1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.9 95.4 GSM293500 19_2008.2A.R283P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM209595 susceptible_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 8e-47 188 GmaAffx.78106.1.S1_at BI974194 - - 9e-7 At3g57650 LPAT2 C.G. S.X.
0.07 3e-15 83 Gma.6417.1.S1_at BQ611795 - - 7e-2 At3g57650 LPAT2 C.G. S.X.
0.01 7e-1 36 PsAffx.C13000126_at PsAffx.C13000126 - - 4e+0 At5g38565 - C.G. S.X.
0.02 7e-1 36 Gma.4379.1.S1_at CD393195 - - 1e-23 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) C.G. S.X.
0.02 7e-1 36 Gma.4379.1.S1_a_at CD393195 - - 1e-23 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) C.G. S.X.
0.02 7e-1 36 Gma.4379.1.S1_x_at CD393195 - - 1e-23 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) C.G. S.X.
0.03 7e-1 36 Gma.2960.1.S1_at CD398323 - - 3e-1 At5g65230 AtMYB53 (myb domain protein 53) C.G. S.X.
0.02 3e+0 34 HgAffx.18233.1.S1_at CA940947 - - 2e+0 At2g20613 unknown protein C.G. S.X.
0.03 3e+0 34 GmaAffx.20340.1.A1_at CD396764 - - 7e-1 At5g48200 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-35 151 Arabidopsis thaliana At3g57650 824934 LPAT2 Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. - - - C.G. S.X.
0.16 2e-32 139 Hordeum vulgare Contig3846_at Contig3846 - - 6e-23 At3g57650 LPAT2 C.G. S.X.
0.17 1e-15 85 Oryza sativa Os11g0637800 CB682849 - 1-acylcerol-3-phosphate acyltransferase-likeprotein 1e-15 At3g57650 LPAT2 C.G. S.X.
0.28 3e-15 83 Populus trichocarpa Ptp.1880.1.A1_at CV283899 hypothetical protein - 5e-14 At3g57650 LPAT2 C.G. S.X.
0.17 2e-34 147 Triticum aestivum Ta.27665.1.S1_at AL829455 1-acy1-glycerol-3-phosphate acyltransferase - 4e-23 At3g57650 LPAT2 C.G. S.X.
0.31 1e-66 252 Vitis vinifera 1618883_at CB970126 hypothetical protein LOC100262467 - 1e-47 At3g57650 LPAT2 C.G. S.X.
0.15 3e-28 125 Zea mays Zm.6560.1.S1_at Z29518.1 phospholipid synthesis1 - 8e-35 At3g57650 LPAT2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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