Gene omics information

Query gene ID	GmaAffx.66865.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.9	GmaAffx.66865.1.S1_at	BU926377	-	-	1e+0	At5g61660	glycine-rich protein	S.X.	H.G.	Please select
0.33	46.1	Gma.1324.2.S1_s_at	BG352137	-	-	8e-51	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.41240.1.S1_at	BQ454033	-	-	2e-12	At2g39290	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select
0.19	23.7	Gma.15744.2.S1_at	AW734739	-	-	1e+0	At2g33510	protein binding	S.X.	H.G.	Please select
0.14	17.5	GmaAffx.78222.2.S1_at	BU083517	-	-	5e-28	At5g08160	ATPK3	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.69348.1.S1_at	BM892310	-	-	4e-26	At2g42520	DEAD box RNA helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
124.4	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
51.1	99.9	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
45.3	99.9	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
19.1	99.7	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
18.6	99.7	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
18.0	99.7	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
16.7	99.7	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
15.1	99.6	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
14.1	99.6	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
11.0	99.4	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	PsAffx.C178000015_at	PsAffx.C178000015	-	-	5e-1	At4g34670	40S ribosomal protein S3A (RPS3aB)	C.G.	S.X.	Please select
0.04	9e-2	38	GmaAffx.49025.1.S1_at	BQ296568	-	-	1e-33	At1g56050	GTP-binding protein-related	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C38000047_at	PsAffx.C38000047	-	-	5e-1	At5g07160	DNA binding / transcription factor	C.G.	S.X.	Please select
0.00	1e+0	34	PsAffx.C37000085_at	PsAffx.C37000085	-	-	4e+0	At4g01735	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C33000098_at	PsAffx.C33000098	-	-	2e-9	At1g10930	RECQ4A	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C326000009_at	PsAffx.C326000009	-	-	7e-1	At5g44540	tapetum-specific protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C166000038_s_at	PsAffx.C166000038	-	-	1e-1	At2g26940	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.8818.1.S1_at	CB379683	-	-	4e+0	At3g20997	LCR55 (Low-molecular-weight cysteine-rich 55)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.84025.1.S1_at	AW234600	-	-	4e-6	At5g51230	EMF2 (EMBRYONIC FLOWER 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-45	180	Hordeum vulgare	Contig13019_at	Contig13019	-	-	2e-10	At2g41670	GTP-binding family protein	C.G.	S.X.	Please select
0.16	8e-37	155	Oryza sativa	Os11g0447300	AK108044.1	-	GTP-binding protein, HSR1-related domaincontaining protein	8e-4	At2g41670	GTP-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	3e-20	99	Populus trichocarpa	PtpAffx.206110.1.S1_at	pmrna12113	hypothetical protein	-	8e-34	At2g41670	GTP-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	TaAffx.57741.1.S1_at	CA625473	-	-	4e+0	At2g24395	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1614209_at	CB345736	similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase	-	1e+0	At3g43153	cAMP-dependent protein kinase inhibitor-related	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.15773.1.A1_a_at	CK369842	hypothetical protein LOC100275691	-	4e+0	At1g13260	RAV1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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