Gene omics information

Query gene ID	GmaAffx.66328.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	78.8	GmaAffx.66328.1.S1_at	AW277770	-	-	3e-13	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.71	87.8	Gma.7674.1.A1_at	BQ785403	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.60	80.7	Gma.3535.1.S1_x_at	CD392670	-	-	2e+0	At5g24650	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.90586.1.S1_s_at	CF806311	-	-	4e-16	At5g01960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.52	73.1	Gma.3535.2.S1_at	BG047223	-	-	2e+0	At2g21320	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.52	73.1	Gma.2742.1.A1_at	AW309965	-	-	5e-9	At3g63310	glutamate binding	S.X.	H.G.	Please select
0.50	71.7	Gma.2742.2.S1_at	BI785482	-	-	1e-6	At3g63310	glutamate binding	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.90193.1.S1_s_at	CF805918	-	-	8e-21	At4g31170	protein kinase family protein	S.X.	H.G.	Please select
0.42	59.3	Gma.12895.2.S1_at	BM187616	-	-	4e-13	At5g16880	VHS domain-containing protein / GAT domain-containing protein	S.X.	H.G.	Please select
0.33	46.1	Gma.6207.1.S1_s_at	CF922738	-	-	7e-16	At4g19640	ARA7	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	96.4	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293313	94_1237.1P.R145U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292852	30_1463.1L.R282L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293329	19_1559.1Q.R134U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-1	36	HgAffx.21545.1.S1_at	BI748208	-	-	3e+0	At1g02170	AMC1 (METACASPASE 1)	C.G.	S.X.	Please select
0.08	3e-1	36	GmaAffx.10720.1.S1_at	BU765494	-	-	3e-5	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Gma.4859.1.S1_at	BI969402	-	-	1e-2	At2g33255	catalytic/ hydrolase/ phosphoglycolate phosphatase	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C8000107_at	PsAffx.C8000107	-	-	5e-2	At2g37678	FHY1 (FAR-RED ELONGATED HYPOCOTYL 1)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C4000108_at	PsAffx.C4000108	-	-	2e-1	At5g15170	tyrosyl-DNA phosphodiesterase-related	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C27000016_at	PsAffx.C27000016	-	-	4e-2	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.15090.1.S1_at	CB299050	-	-	3e+0	At5g17800	AtMYB56 (myb domain protein 56)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.81315.1.S1_at	BQ630101	-	-	4e-37	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.71635.1.S1_at	BE023449	-	-	5e-28	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	3e-13	75	Arabidopsis thaliana	At1g16180	838187	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	9e-15	79	Hordeum vulgare	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.09	5e-7	56	Oryza sativa	Os03g0454100	AK067011.1	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-11	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	2e-33	143	Populus trichocarpa	PtpAffx.1257.2.A1_at	CV236343	hypothetical protein	-	6e-34	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	1e-6	54	Triticum aestivum	Ta.906.3.S1_a_at	CA604628	-	-	6e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.25	2e-23	107	Vitis vinifera	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.07	2e-9	61	Zea mays	Zm.747.1.A1_at	CF627612	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage