Gene omics information

Query gene ID	GmaAffx.65538.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.2	GmaAffx.65538.1.S1_s_at	CA783421	-	-	2e+0	At5g58260	-	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.45956.1.S1_at	BG238301	-	-	2e-4	At1g17160	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.55698.1.S1_at	BM891117	-	-	3e-38	At5g57360	ZTL (ZEITLUPE)	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.56943.1.S1_at	AW185138	-	-	1e+0	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.76529.1.S1_at	BI892756	-	-	1e+0	At2g03230	-	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.74953.1.S1_at	BG405162	-	-	5e+0	At5g20885	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.71635.1.S1_at	BE023449	-	-	5e-28	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.55872.1.S1_at	CA800829	-	-	8e-1	At2g41120	unknown protein	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.76735.1.S1_at	BG405106	-	-	8e-4	At5g44570	unknown protein	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.76092.1.S1_at	AW759911	-	-	4e-7	At5g46210	CUL4 (CULLIN4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.9	99.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.5	97.7	GSM294025	76_3104.2F.V7F3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292765	28_1432.1K.R265P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293266	51_C071.1P.V7P3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	36	GmaAffx.87042.1.S1_at	AW596159	-	-	1e-9	At4g12420	SKU5	C.G.	S.X.	Please select
0.04	8e-1	34	GmaAffx.89806.2.S1_x_at	CK606431	-	-	1e-12	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.04	8e-1	34	GmaAffx.89806.2.S1_s_at	CK606431	-	-	1e-12	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.04	8e-1	34	GmaAffx.89806.2.A1_at	CK606431	-	-	1e-12	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.06	8e-1	34	GmaAffx.30724.1.S1_at	AW423812	-	-	2e-1	At3g60080	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	3e+0	32	PsAffx.CL1265Contig1_at	PsAffx.CL1265Contig1	-	-	1e+0	At3g60720	PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)	C.G.	S.X.	Please select
0.03	3e+0	32	PsAffx.C1094000002_at	PsAffx.C1094000002	-	-	5e-1	At4g27670	HSP21 (HEAT SHOCK PROTEIN 21)	C.G.	S.X.	Please select
0.04	3e+0	32	HgAffx.3691.1.S1_at	AF500023.1	-	-	4e+0	At5g14470	GHMP kinase-related	C.G.	S.X.	Please select
0.03	3e+0	32	GmaAffx.92687.1.S1_s_at	CF808962	-	-	1e-28	At1g48830	40S ribosomal protein S7 (RPS7A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	34	Hordeum vulgare	HW01L12u_at	HW01L12u	-	-	8e-7	At4g35600	CONNEXIN 32	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	OsAffx.27366.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Populus trichocarpa	PtpAffx.225016.1.S1_s_at	pmrna44027	hypothetical protein	-	1e+0	At5g02600	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e+0	32	Triticum aestivum	TaAffx.70601.1.S1_at	BQ802878	-	-	6e+0	At5g61570	protein kinase family protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1611563_at	CF213078	-	-	2e-4	At5g40980	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	30	Zea mays	ZmAffx.147.1.S1_at	AI667831	Hypothetical protein LOC100192026	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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