Gene omics information

Query gene ID	GmaAffx.65255.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	GmaAffx.65255.1.A1_at	BU545616	-	-	1e-7	At1g76990	ACR3	S.X.	H.G.	Please select
0.55	76.3	Gma.13588.1.S1_at	CD401190	-	-	9e-1	At5g53040	RWP-RK domain-containing protein	S.X.	H.G.	Please select
0.50	71.7	Gma.7114.1.A1_at	BG156723	-	-	3e-4	At1g76990	ACR3	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.1166.1.S1_at	BE822888	Dof20	-	2e-4	At3g47500	CDF3 (CYCLING DOF FACTOR 3)	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.71293.1.S1_s_at	AW569180	-	-	3e+0	At1g35255	unknown protein	S.X.	H.G.	Please select
0.07	10.2	Gma.6246.1.S1_at	AW348532	-	-	3e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.90596.1.S1_s_at	CF806321	-	-	5e-3	At4g33985	unknown protein	S.X.	H.G.	Please select
0.04	7.0	Gma.5210.1.S1_at	AW349120	-	-	1e-12	At5g41410	BEL1 (BELL 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.7	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
18.6	99.7	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
17.1	99.7	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.0	99.5	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.6	99.5	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
11.1	99.4	GSM209592	resistant_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.3	99.3	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.9	99.2	GSM209575	susceptible_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.7	99.1	GSM294042	91_3108.2F.SLF3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.6	99.1	GSM209586	susceptible_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-30	135	GmaAffx.28699.1.S1_at	BQ611165	-	-	4e-9	At1g76990	ACR3	C.G.	S.X.	Please select
0.03	1e-5	52	GmaAffx.82880.1.S1_at	BM143672	-	-	1e-20	At1g69040	ACR4 (ACT REPEAT 4)	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.14912.1.S1_at	BQ612084	-	-	6e-2	At1g42080	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	Gma.3415.1.S1_at	BQ628119	-	-	5e+0	At4g09649	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Gma.13520.1.A1_at	CD399653	-	-	3e+0	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select
0.02	7e-1	36	HgAffx.6270.1.S1_at	CB825941	-	-	1e+0	At2g14810	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	36	Gma.2218.1.S1_a_at	BE822404	-	-	2e-12	At4g09340	SPla/RYanodine receptor (SPRY) domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.C119000010_at	PsAffx.C119000010	-	-	6e-3	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C1000205_at	PsAffx.C1000205	-	-	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-7	57	Arabidopsis thaliana	At1g76990	844035	ACR3	F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Hordeum vulgare	HW06M17u_at	HW06M17u	-	-	3e+0	At5g39800	60S ribosomal protein-related	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	Os03g0413100	AK100182.1	-	ACR4	6e-3	At2g03730	ACR5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	5e-14	79	Populus trichocarpa	PtpAffx.205574.1.S1_x_at	pmrna11015	hypothetical protein	-	8e-53	At1g76990	ACR3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	TaAffx.112433.2.S1_at	CA623960	-	-	3e-41	At3g12780	PGK1 (PHOSPHOGLYCERATE KINASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1608485_at	CB971621	hypothetical protein LOC100251681	-	3e-11	At5g19855	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.12627.1.S1_at	CA831553	-	-	1e+0	At1g43630	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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