Gene omics information

Query gene ID	GmaAffx.64309.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.62	82.1	GmaAffx.64309.2.S1_at	AW309050	-	-	4e-43	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	S.X.	H.G.	Please select
0.81	91.7	GmaAffx.92270.1.S1_at	CF807322	-	-	4e-53	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	S.X.	H.G.	Please select
0.74	89.2	GmaAffx.82634.1.S1_at	BM178738	-	-	3e-72	At5g16930	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.72	88.1	GmaAffx.92270.1.S1_s_at	CF807322	-	-	4e-53	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	S.X.	H.G.	Please select
0.71	87.8	Gma.6056.1.S1_at	BQ453230	-	-	2e-4	At1g23100	10 kDa chaperonin, putative	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.230.1.S1_at	CD416961	-	-	2e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	S.X.	H.G.	Please select
0.46	65.5	Gma.6395.1.S1_at	BU547039	-	-	1e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	S.X.	H.G.	Please select
0.43	60.6	Gma.6820.1.S1_at	AI416867	-	-	1e-13	At1g03860	ATPHB2 (PROHIBITIN 2)	S.X.	H.G.	Please select
0.43	60.6	Gma.3183.1.S1_a_at	BE822841	-	-	2e-14	At3g20050	ATTCP-1	S.X.	H.G.	Please select
0.38	53.3	Gma.11147.1.S1_at	CA937458	-	-	2e+0	At3g46170	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.2	99.9	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
27.8	99.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
27.8	99.8	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
24.7	99.8	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
22.9	99.8	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
21.5	99.8	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
19.8	99.7	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
19.4	99.7	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
18.4	99.7	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
16.1	99.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-6	52	Gma.14653.2.S1_a_at	BQ080095	-	-	9e-33	At1g63180	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	C.G.	S.X.	Please select
0.05	5e-3	42	GmaAffx.57775.1.S1_s_at	BQ081638	-	-	1e-46	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.03	5e-3	42	Gma.11119.5.S1_at	BI315933	-	-	2e-99	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.03	5e-3	42	Gma.11119.5.S1_x_at	BI315933	-	-	2e-99	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.04	2e-2	40	PsAffx.CL1893Contig1_at	PsAffx.CL1893Contig1	-	-	1e-1	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please select
0.02	8e-2	38	PsAffx.C34000104_at	PsAffx.C34000104	-	-	3e+0	At2g34310	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	38	GmaAffx.66003.1.S1_at	AI461128	-	-	3e-1	At2g36295	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	38	GmaAffx.49469.1.S1_s_at	BG047279	-	-	2e-1	At5g07040	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	8e-2	38	GmaAffx.32347.1.A1_at	BI970426	-	-	3e+0	At3g24520	AT-HSFC1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	4e-43	174	Arabidopsis thaliana	At5g38110	833791	ASF1B (ANTI- SILENCING FUNCTION 1B)	This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	2e-37	155	Hordeum vulgare	Contig10104_at	Contig10104	-	-	1e-16	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.38	1e-32	141	Oryza sativa	OsAffx.15141.3.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	1e-65	250	Populus trichocarpa	PtpAffx.43868.1.S1_at	CV282588	silencing group A protein	-	4e-45	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	9e-41	167	Triticum aestivum	Ta.6897.1.S1_at	BJ310110	-	-	6e-19	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.04	4e-3	40	Vitis vinifera	1621192_at	CF516648	hypothetical protein LOC100248705	-	4e+0	At2g27920	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51)	C.G.	S.X.	Please select
0.31	1e-22	105	Zea mays	Zm.13729.1.S1_at	AY106251.1	anti-silencing protein 1	-	1e-20	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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