Gene omics information

Query gene ID	GmaAffx.64117.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.2	GmaAffx.64117.1.S1_at	BG239723	-	-	1e-5	At1g67970	AT-HSFA8	S.X.	H.G.	Please select
0.57	78.8	Gma.2975.1.S1_at	CD415567	-	-	4e-1	At4g14600	-	S.X.	H.G.	Please select
0.48	67.7	Gma.7674.1.A1_at	BQ785403	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.90586.1.S1_s_at	CF806311	-	-	4e-16	At5g01960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.42	59.3	Gma.2608.1.S1_at	BE058812	-	-	1e-9	At4g11740	SAY1	S.X.	H.G.	Please select
0.38	53.3	Gma.16469.1.S1_s_at	CD408070	-	-	1e-8	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.35	48.6	Gma.10759.1.S1_at	BE822425	-	-	1e-29	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	S.X.	H.G.	Please select
0.31	42.2	Gma.2742.1.A1_at	AW309965	-	-	5e-9	At3g63310	glutamate binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	99.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.2	98.9	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1	97.3	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.2	96.0	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294238	87_2337.2H.R240L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-3	46	Gma.8636.1.S1_at	BU760760	-	-	4e-10	At5g03720	AT-HSFA3	C.G.	S.X.	Please select
0.05	4e-3	44	GmaAffx.85442.1.S1_at	CA801396	-	-	2e-26	At4g13980	AT-HSFA5	C.G.	S.X.	Please select
0.03	4e-3	44	Gma.8466.1.S1_at	CD409663	-	-	1e-24	At1g46264	AT-HSFB4	C.G.	S.X.	Please select
0.02	6e-2	40	Gma.4798.1.A1_at	AW317221	-	-	4e+0	At4g30390	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	HgAffx.7720.1.S1_at	CB824491	-	-	2e-1	At4g26500	CPSUFE (CHLOROPLAST SULFUR E)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.63876.1.S1_at	BI317088	-	-	6e-2	At3g24520	AT-HSFC1	C.G.	S.X.	Please select
0.04	2e-1	38	Gma.30.1.S1_at	CA937082	-	-	1e-33	At1g46264	AT-HSFB4	C.G.	S.X.	Please select
0.01	9e-1	36	PsAffx.C83000043_at	PsAffx.C83000043	-	-	6e+0	At1g60000	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.CL1212Contig1_at	PsAffx.CL1212Contig1	-	-	5e-1	At5g52900	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-5	52	Arabidopsis thaliana	At1g67970	843125	AT-HSFA8	member of Heat Stress Transcription Factor (Hsf) family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e+0	32	Hordeum vulgare	HF24C10r_at	HF24C10r	-	-	1e+1	At5g53610	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.04	3e-4	48	Oryza sativa	OsAffx.13015.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-7	57	Populus trichocarpa	PtpAffx.18238.1.S1_a_at	CV256016	hypothetical protein	-	8e-7	At2g26150	ATHSFA2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+1	32	Triticum aestivum	TaAffx.65101.1.A1_at	BJ261708	-	-	3e-1	At1g61470	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622067_at	AJ003113.1	PR-1 protein	-	2e+0	At2g14580	ATPRB1	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.1529.1.S1_at	40794996-124	-	-	3e+0	At3g22510	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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