Gene omics information

Query gene ID	GmaAffx.64030.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.64030.1.S1_at	AI495513	-	-	1e-3	At3g62770	AtATG18a	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.71902.1.S1_at	BE607717	-	-	3e-1	At5g58680	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.75510.1.S1_at	AW200973	-	-	1e-4	At3g29390	RIK (RS2-Interacting KH protein)	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.92182.1.S1_s_at	CF807907	-	-	9e-1	At1g69800	CBS domain-containing protein	S.X.	H.G.	Please select
0.10	13.0	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.09	12.0	Gma.10691.4.S1_x_at	BM523847	-	-	5e-22	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	99.2	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292886	61_1483.1L.R292U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292843	22_C214.1L.V7L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294517	7_2528.2K.R184P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM293501	1_2044.2A.R007P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.4	97.6	GSM294251	11_2418.2I.R236P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293835	75_2148.2D.R010P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293801	44_2156.2D.R099P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	7e-28	125	GmaAffx.69047.2.S1_at	AI900833	-	-	2e-8	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.09	1e-10	67	PsAffx.CL885Contig1_at	PsAffx.CL885Contig1	-	-	1e-2	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.02	3e-2	40	PsAffx.C33000002_at	PsAffx.C33000002	-	-	6e-6	At4g39410	WRKY13	C.G.	S.X.	Please select
0.02	5e-1	36	PsAffx.C9000006_at	PsAffx.C9000006	-	-	7e-1	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C9000131_at	PsAffx.C9000131	-	-	8e+0	At5g36925	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C200000005_at	PsAffx.C200000005	-	-	8e-1	At3g21940	receptor protein kinase-related	C.G.	S.X.	Please select
0.02	5e-1	36	PsAffx.C109000054_at	PsAffx.C109000054	-	-	9e+0	At4g00840	zinc ion binding	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.40829.1.S1_at	BQ473174	-	-	4e-10	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C80000081_at	PsAffx.C80000081	-	-	2e-1	At4g30770	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	44	Arabidopsis thaliana	At3g62770	825452	AtATG18a	Required for autophagosome formation during nutrient deprivation and senescence.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	9e-22	103	Hordeum vulgare	Contig10568_at	Contig10568	-	-	4e-5	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.16	5e-14	79	Oryza sativa	Os01g0934000	AK060679.1	-	WD40-like domain containing protein	1e-5	At3g62770	AtATG18a	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	3e-11	69	Populus trichocarpa	PtpAffx.150314.1.S1_at	BU869295	hypothetical protein	-	1e-6	At3g62770	AtATG18a	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	3e-20	99	Triticum aestivum	Ta.13175.3.S1_at	CA601620	-	-	7e-2	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613721_at	CF372597	hypothetical protein LOC100264633	-	2e-19	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	C.G.	S.X.	Please select
0.24	3e-21	101	Zea mays	Zm.4484.2.A1_at	AY108719.1	hypothetical protein LOC100272812	-	5e-11	At3g62770	AtATG18a	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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