Gene omics information

Query gene ID	GmaAffx.63645.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.63645.1.S1_at	BG509439	-	-	5e-2	At4g09490	RNase H domain-containing protein	S.X.	H.G.	Please select
0.21	26.6	Gma.8837.1.A1_at	BU546217	-	-	9e-1	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.53651.1.S1_at	BE608294	-	-	6e-2	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	S.X.	H.G.	Please select
0.08	11.0	Gma.15837.1.S1_at	CD415214	-	-	7e-16	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	S.X.	H.G.	Please select
0.01	3.4	Gma.5686.1.S1_at	CA935460	-	-	3e-58	At5g47080	CKB1	S.X.	H.G.	Please select
0.00	1.4	GmaAffx.87880.2.S1_at	BE805550	-	-	1e-2	At1g15280	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	99.7	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
13.6	99.5	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8	99.5	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.4	99.5	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
10.6	99.3	GSM292233	35_C030.1B.R9B2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.8	99.3	GSM294350	12_2445.2J.R294L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM294379	39_2447.2J.R119U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.5	99.1	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
8.5	99.1	GSM244856	28_V71.I1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
8.0	99.0	GSM294362	23_2443.2J.R083U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-58	226	GmaAffx.10566.1.A1_at	BU550165	-	-	1e+0	At5g01750	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.85430.1.S1_at	BQ741648	-	-	3e-2	At3g47640	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.71583.1.A1_at	BU546824	-	-	1e-1	At1g59540	ZCF125	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.26908.1.S1_at	BF425834	-	-	5e-6	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.8032.1.S1_at	BQ629250	-	-	1e-11	At3g53850	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C58000010_at	PsAffx.C58000010	-	-	1e+0	At1g35890	DNA binding	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C210000006_at	PsAffx.C210000006	-	-	1e-2	At5g41630	F-box family protein	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C129000026_at	PsAffx.C129000026	-	-	8e-1	At4g40080	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.15661.2.S1_at	CB377778	-	-	8e-2	At1g57620	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At4g09490	826533	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HVSMEa0003C06r2_x_at	HVSMEa0003C06r2	-	-	5e-2	At1g35420	dienelactone hydrolase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os01g0972800	AY341842.1	-	WRKY transcription factor 44	2e-7	At5g43290	WRKY49	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-14	77	Populus trichocarpa	PtpAffx.222489.1.S1_at	pmrna39950	hypothetical protein	-	4e-25	At2g17140	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-1	34	Triticum aestivum	TaAffx.107589.1.S1_at	CA681649	-	-	3e-1	At5g17760	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619672_at	CF512541	-	-	4e+0	At5g02510	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.10511.1.S1_at	CF011340	-	-	1e+0	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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