Gene omics information

Query gene ID	GmaAffx.636.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	65.5	GmaAffx.636.1.S1_at	BM523305	-	-	1e+0	At3g46900	COPT2	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.32157.1.S1_at	BU547860	-	-	2e-2	At5g44380	FAD-binding domain-containing protein	S.X.	H.G.	Please select
0.29	39.0	Gma.6617.1.S1_at	BQ629224	-	-	2e+0	At5g06190	unknown protein	S.X.	H.G.	Please select
0.12	15.1	GmaAffx.75390.1.S1_at	BG359611	-	-	3e-1	At5g07475	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.07	10.2	Gma.5947.1.S1_s_at	BQ610509	-	-	1e-1	At1g30060	COP1-interacting protein-related	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.87908.1.S1_at	BM270150	-	-	2e-23	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	99.1	GSM292441	42_C117.1G.SLG2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM292300	47_C077.1E.SLE1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM292872	49_1469.1L.R285U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM293117	31_1117.1O.R074U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.7	98.7	GSM292328	75_C081.1E.SLE2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM292835	15_1467.1L.R284U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM294410	67_2461.2J.R176L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM294043	92_3107.2F.SLF3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM293967	23_2261.2F.R205U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM294044	93_2261.2F.R205L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-68	260	GmaAffx.636.2.A1_at	CD394062	-	-	3e+0	At5g51451	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C225000015_at	PsAffx.C225000015	-	-	5e-2	At1g15200	protein-protein interaction regulator family protein	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C225000015_s_at	PsAffx.C225000015	-	-	5e-2	At1g15200	protein-protein interaction regulator family protein	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.35331.1.S1_at	BI967623	-	-	9e-1	At4g30670	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C161000007_at	PsAffx.C161000007	-	-	1e-1	At2g11910	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C161000006_at	PsAffx.C161000006	-	-	6e-1	At3g58080	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C153000020_at	PsAffx.C153000020	-	-	9e-1	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.68128.1.S1_at	BG510841	-	-	3e-34	At5g49830	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.45573.1.A1_at	AW201213	-	-	7e-2	At3g46560	TIM9	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	Contig6730_at	Contig6730	-	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os02g0167000	9630.m00644	-	Holocarboxylase synthetase 2 (Holocarboxylasesynthetase hcs2.b)	2e-3	At1g37150	HCS2 (holocarboxylase synthetase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.223634.1.S1_x_at	pmrna41717	hypothetical protein	-	7e-1	At3g45673	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	Ta.4570.1.S1_at	BJ273027	-	-	3e-1	At4g36100	-	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1618268_at	BQ795179	-	-	3e-1	At1g07420	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1)	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.477.1.A1_at	AI677582	-	-	8e-1	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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