CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.63137.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 57.1 GmaAffx.63137.1.S1_at BG043541 - - 2e-6 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) S.X. H.G.
0.40 57.1 GmaAffx.91561.1.S1_s_at CF807286 - - 3e-4 At5g58070 TIL (TEMPERATURE-INDUCED LIPOCALIN) S.X. H.G.
0.24 30.9 GmaAffx.55896.1.S1_at BI975050 - - 6e-2 At2g10920 unknown protein S.X. H.G.
0.15 18.7 Gma.14614.1.S1_at CD409596 - - 4e-1 At2g30620 histone H1.2 S.X. H.G.
0.09 12.0 Gma.5631.1.S1_at CD405214 - - 1e-4 At5g23810 AAP7 S.X. H.G.
0.02 4.5 Gma.11299.3.S1_x_at BG045664 - - 3e-25 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.5 GSM209587 resistant_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.1 99.5 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.0 99.5 GSM293882 33_3082.2E.SLE2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7 99.4 GSM292444 45_C114.1G.SLG1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.1 99.4 GSM293952 9_3078.2E.SLE1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.5 99.3 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.0 99.3 GSM294237 86_3142.2H.SLH3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.8 99.3 GSM293491 10_3002.2A.SLA1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0 99.2 GSM294296 48_3150.2I.SLI1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0 99.2 GSM293998 51_3092.2F.SLF1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Gma.8531.1.S1_at AF117885.1 seed maturation protein PM31 - 2e-2 At5g59720 HSP18.2 (heat shock protein 18.2) C.G. S.X.
0.03 2e+0 34 GmaAffx.56822.1.A1_at CD407773 - - 3e+0 At2g27280 unknown protein C.G. S.X.
0.02 2e+0 34 Gma.7006.1.S1_at AF516880.1 expansin - 6e-26 At3g55500 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) C.G. S.X.
0.02 2e+0 34 Gma.662.1.S1_at CD409953 - - 1e-1 At1g70680 caleosin-related family protein C.G. S.X.
0.03 2e+0 34 Gma.5943.1.S1_at BQ610490 - - 3e+0 At5g60810 unknown protein C.G. S.X.
0.01 8e+0 32 PsAffx.C96000038_s_at PsAffx.C96000038 - - 7e+0 At4g18620 - C.G. S.X.
0.02 8e+0 32 PsAffx.C54000070_at PsAffx.C54000070 - - 1e-1 At2g15580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 8e+0 32 PsAffx.C356000004_at PsAffx.C356000004 - - 1e+0 At1g06050 unknown protein C.G. S.X.
0.00 8e+0 32 PsAffx.C300000005_at PsAffx.C300000005 - - 1e+0 At1g09840 ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-6 54 Arabidopsis thaliana At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. - - - C.G. S.X.
0.07 2e-7 56 Hordeum vulgare rbaal10h14_at rbaal10h14 - - 5e-9 At5g29560 calcium ion binding C.G. S.X.
0.02 2e-1 38 Oryza sativa Os08g0533700 AK073691.1 - Conserved hypothetical protein 2e+0 At4g39753 kelch repeat-containing F-box family protein C.G. S.X.
0.11 6e-4 46 Populus trichocarpa Ptp.6973.1.S1_s_at CV257729 hypothetical protein - 1e-4 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.08 3e-5 50 Triticum aestivum Ta.9830.1.A1_a_at BJ237316 - - 5e-1 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.06 2e-3 42 Vitis vinifera 1620307_at CB348708 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) C.G. S.X.
0.04 1e-2 40 Zea mays Zm.2648.1.A1_at AY104745.1 hypothetical protein LOC100216957 - 3e-3 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage