Gene omics information

Query gene ID	GmaAffx.62630.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	57.1	GmaAffx.62630.1.S1_at	BE329740	-	-	9e-1	At5g23035	-	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.12608.1.A1_at	BE583858	-	-	2e-1	At3g46380	unknown protein	S.X.	H.G.	Please select
0.60	80.7	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.29942.1.S1_at	AW567850	-	-	1e+0	At2g04870	unknown protein	S.X.	H.G.	Please select
0.11	14.2	Gma.1143.1.A1_at	AW278604	-	-	4e-6	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.53651.1.S1_at	BE608294	-	-	6e-2	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.7	GSM294380	3_2464.2J.R260P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM244814	19_SLO.M5W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.1	97.3	GSM294416	72_2472.2J.R108P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294124	79_2322.2G.R006P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294359	20_2446.2J.R294P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294507	70_2515.2K.R005U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294352	14_2471.2J.R108L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294492	57_2498.2K.R218P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	PsAffx.C39000068_at	PsAffx.C39000068	-	-	5e-3	At4g29000	tesmin/TSO1-like CXC domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C17000014_at	PsAffx.C17000014	-	-	1e-2	At2g16860	GCIP-interacting family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C145000041_s_at	PsAffx.C145000041	-	-	5e-3	At1g06070	bZIP transcription factor, putative (bZIP69)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.66486.1.A1_at	AW348912	-	-	6e-1	At2g22145	-	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.63570.1.S1_at	BG362792	-	-	2e-17	At3g04480	endoribonuclease	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.17737.1.S1_at	BM108350	-	-	0	Atcg01310	-	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C86000062_at	PsAffx.C86000062	-	-	2e+0	At1g77710	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C63000076_at	PsAffx.C63000076	-	-	5e-1	At1g15720	TRFL5 (TRF-LIKE 5)	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C234000006_at	PsAffx.C234000006	-	-	3e-1	At4g11960	PGRL1B (PGR5-Like B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-1	34	Arabidopsis thaliana	At5g23035	3770692	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	30	Hordeum vulgare	HA30O21r_at	HA30O21r	-	-	2e+0	At4g35905	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os10g0205100	9638.m01216	-	-	7e+0	At5g23035	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Populus trichocarpa	Ptp.4305.1.S1_at	CF228631	hypothetical protein	-	4e-4	At1g69230	SP1L2 (SPIRAL1-LIKE2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.15441.1.A1_at	BQ169207	-	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1620566_at	BQ792987	-	-	7e-1	At3g42860	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17720.1.A1_at	BM340967	-	-	9e-1	At4g12340	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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