Gene omics information

Query gene ID	GmaAffx.62304.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.8	GmaAffx.62304.1.S1_at	BM178289	-	-	6e-2	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.78253.1.S1_at	BM954563	-	-	2e-1	At4g18070	unknown protein	S.X.	H.G.	Please select
0.50	71.7	Gma.5627.1.S1_at	BE917603	-	-	1e+0	At1g09645	unknown protein	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.41843.1.S1_s_at	BM187682	-	-	2e-6	At3g51850	CPK13	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.83013.1.S1_at	BQ080142	-	-	8e-1	At5g16023	RTFL18 (ROTUNDIFOLIA LIKE 18)	S.X.	H.G.	Please select
0.14	17.5	GmaAffx.14871.1.S1_at	BG510693	-	-	9e-1	At3g01760	lysine and histidine specific transporter, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.7	GSM244822	20_CON.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.0	98.5	GSM292486	83_C113.1G.SLG1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.9	98.5	GSM292857	35_1485.1L.R293L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294360	21_2459.2J.R291U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM292846	25_1485.1L.R293U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM244806	17_CON.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.6	98.3	GSM293591	22_2055.2B.R020U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM244819	1_V71.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.1	98.1	GSM292350	19_1227.1F.R139L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	2e-39	163	GmaAffx.40458.1.A1_at	BU547695	-	-	4e+0	At5g25390	SHN2 (shine2)	C.G.	S.X.	Please select
0.21	3e-7	56	GmaAffx.68088.1.S1_at	BG507880	-	-	1e+0	At2g34330	unknown protein	C.G.	S.X.	Please select
0.10	8e-5	48	GmaAffx.5509.1.S1_at	BQ079684	-	-	5e-2	At4g21230	protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C79000004_at	PsAffx.C79000004	-	-	4e+0	Atcg00810	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.30021.1.A1_at	BU549503	-	-	3e-23	At1g26650	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.3820.1.S1_a_at	AW156783	-	-	9e-34	At1g30230	elongation factor 1-beta / EF-1-beta	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.3820.1.S1_at	AW156783	-	-	9e-34	At1g30230	elongation factor 1-beta / EF-1-beta	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.13650.1.A1_at	BU546973	-	-	2e+0	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C91000008_at	PsAffx.C91000008	-	-	8e+0	At1g79790	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-2	38	Arabidopsis thaliana	At1g68760	843207	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	Encodes a cytosol localized nudix hydrolase that hydrolizes 8-oxo-dGTP.Involved in suppressing oxidative DNA damage.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	HT05G18u_at	HT05G18u	-	-	4e+0	At1g47271	-	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	OsAffx.13597.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	8e-2	38	Populus trichocarpa	PtpAffx.209693.1.S1_at	pmrna19133	hypothetical protein	-	2e+0	At5g50345	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-1	36	Triticum aestivum	TaAffx.50455.1.S1_at	CA740096	-	-	2e-2	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1610375_at	CD717396	-	-	1e+0	At3g23770	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.4524.1.A1_at	CD971358	-	-	1e+1	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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