Gene omics information

Query gene ID	GmaAffx.61984.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	93.7	GmaAffx.61984.1.S1_at	BM523130	-	-	4e-9	At5g18810	SCL28	S.X.	H.G.	Please select
0.58	78.8	GmaAffx.15284.1.S1_at	BE822730	-	-	6e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.84359.1.S1_at	BM955089	-	-	7e-9	At3g55460	SCL30	S.X.	H.G.	Please select
0.55	76.3	Gma.15407.4.S1_at	AW185051	-	-	1e-21	At5g52040	ATRSP41	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.82.1.S1_at	CD415578	-	-	9e-8	At3g10210	-	S.X.	H.G.	Please select
0.42	59.3	Gma.9020.2.S1_at	AI736080	-	-	1e-14	At2g43970	La domain-containing protein	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.26	33.9	Gma.4995.2.S1_at	AW830184	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select
0.25	32.6	Gma.1651.1.S1_at	CD395076	-	-	4e-1	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	98.2	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM294059	17_3118.2G.R9G2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294489	54_3198.2K.R9K3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294544	17_3208.2L.R9L2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292575	85_C136.1H.R9H2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-1	36	GmaAffx.86434.1.S1_s_at	BG651980	-	-	3e-25	At3g13570	SCL30a	C.G.	S.X.	Please select
0.11	3e-1	36	Gma.16369.2.S1_at	BM308587	-	-	6e-14	At3g13570	SCL30a	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.62819.1.S1_at	BU965368	-	-	3e+0	At4g30740	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	32	PsAffx.psHB036xC16f_at	PsAffx.psHB036xC16f	-	-	2e-1	At1g54540	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C155000030_at	PsAffx.C155000030	-	-	1e-1	At4g17950	DNA-binding family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C107000007_at	PsAffx.C107000007	-	-	4e-1	At2g45510	CYP704A2	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.8845.1.S1_at	CB379656	-	-	1e+0	At4g21030	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Gma.17665.3.S1_at	BG363020	-	-	5e-12	At3g51950	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	5e+0	32	Gma.15462.3.S1_at	BQ298325	-	-	3e-15	At3g53460	CP29	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-9	61	Arabidopsis thaliana	At5g18810	831999	SCL28	encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e+0	30	Hordeum vulgare	Contig14270_s_at	Contig14270	-	-	3e-1	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select
0.06	7e+0	32	Oryza sativa	OsAffx.16191.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	2e-27	123	Populus trichocarpa	Ptp.5191.1.S1_at	BU829961	hypothetical protein	-	6e-15	At5g18810	SCL28	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	Ta.28771.1.A1_at	AJ601859	-	-	8e-1	At1g66380	MYB114 (myb domain protein 114)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621367_at	CF210106	-	-	1e+0	At2g29440	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.7846.1.A1_x_at	BM080581	MPK17-2 - putative MAPK	-	1e+0	At3g12210	sequence-specific DNA binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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