Gene omics information

Query gene ID	GmaAffx.60984.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	GmaAffx.60984.1.S1_at	BU765206	-	-	2e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.36409.1.S1_at	BQ473745	-	-	6e+0	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	S.X.	H.G.	Please select
0.38	53.3	Gma.7993.1.S1_at	BI967267	-	-	1e-7	At4g12490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.38	53.3	Gma.11301.1.S1_at	BM093908	-	-	1e-1	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.29	39.0	Gma.6267.1.S1_at	CD403650	-	-	3e-2	At5g62940	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.70713.1.S1_at	BF597623	-	-	6e-5	At5g52860	ABC transporter family protein	S.X.	H.G.	Please select
0.01	3.4	Gma.7515.1.S1_at	BU548256	-	-	2e-15	At2g06925	PLA2-ALPHA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
150.0	100.0	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
144.2	100.0	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
50.9	99.9	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
50.2	99.9	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
35.2	99.9	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
34.2	99.9	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
32.6	99.9	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
28.3	99.8	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
23.0	99.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
22.9	99.8	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-10	65	Gma.4050.1.S1_at	AW317179	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.05	2e-3	44	Gma.2516.1.S1_at	AW309755	-	-	2e-9	At2g45180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	3e-2	40	PsAffx.C60000083_at	PsAffx.C60000083	-	-	2e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.08	3e-2	40	Gma.6146.1.S1_at	BI969869	-	-	3e-8	At5g46890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Gma.7993.1.S1_at	BI967267	-	-	1e-7	At4g12490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.1372.1.S1_at	AW309996	-	-	7e-51	At3g44110	ATJ3	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.3872.2.S1_at	CA801584	-	-	6e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C23000039_at	PsAffx.C23000039	-	-	3e+0	At2g21780	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.9156.1.S1_at	CB379345	-	-	5e+0	At3g02390	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-2	40	Arabidopsis thaliana	At4g12500	826862	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:unknown;POBMVFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-2	40	Hordeum vulgare	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.07	3e-3	44	Oryza sativa	Os02g0662000	AK109149.1	-	RCc3 protein	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-7	57	Populus trichocarpa	Ptp.5748.1.S1_s_at	CX657082	hypothetical protein	-	3e-13	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	9e-5	48	Triticum aestivum	Ta.994.3.S1_at	CA604487	-	-	3e-1	At4g39250	ATRL1 (ARABIDOPSIS RAD-LIKE 1)	C.G.	S.X.	Please select
0.15	3e-8	57	Vitis vinifera	1608800_s_at	CF209291	hypothetical protein LOC100247265	-	1e-2	At1g12100	lipid binding	C.G.	S.X.	Please select
0.06	1e-7	56	Zea mays	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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