Gene omics information

Query gene ID	GmaAffx.60654.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	GmaAffx.60654.1.S1_s_at	BI316139	-	-	2e-9	At1g55850	ATCSLE1	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.91563.1.S1_at	CF807288	-	-	1e+0	At3g02493	RTFL19 (ROTUNDIFOLIA LIKE 19)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.58144.1.S1_at	AW349047	-	-	1e+0	At4g39900	unknown protein	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.76779.1.S1_at	BQ094164	-	-	6e-2	At5g06750	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.21	26.6	GmaAffx.86175.2.S1_at	BI471498	-	-	2e-2	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	S.X.	H.G.	Please select
0.20	25.1	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.6	GSM244867	30_V71.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.3	98.2	GSM293237	25_1543.1P.R053L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293421	12_C105.1R.V7R3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM244819	1_V71.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.1	98.1	GSM293429	1_C105.1R.V7R3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM294324	73_3151.2I.SLI2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM244801	15_V71.I3U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.8	97.9	GSM293025	2_C027.1N.V7N2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293452	40_C097.1R.V7R2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	965	GmaAffx.91563.1.S1_at	CF807288	-	-	1e+0	At3g02493	RTFL19 (ROTUNDIFOLIA LIKE 19)	C.G.	S.X.	Please select
0.35	5e-35	149	GmaAffx.81399.2.S1_at	BM085742	-	-	1e-6	At1g55850	ATCSLE1	C.G.	S.X.	Please select
0.26	3e-33	143	GmaAffx.80826.1.S1_at	BE347684	-	-	1e-3	At1g55850	ATCSLE1	C.G.	S.X.	Please select
0.21	1e-23	111	GmaAffx.49842.1.S1_at	BG237217	-	-	2e-5	At4g24000	ATCSLG2	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.31220.1.S1_at	BE823269	-	-	4e+0	At2g17970	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C101000009_at	PsAffx.C101000009	-	-	5e+0	At1g23080	PIN7 (PIN-FORMED 7)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.60859.1.A1_at	BU550962	-	-	5e-3	At2g20370	MUR3 (MURUS 3)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.60859.1.A1_s_at	BU550962	-	-	5e-3	At2g20370	MUR3 (MURUS 3)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.55576.1.S1_at	AI496614	-	-	1e+0	At4g21105	cytochrome-c oxidase/ electron carrier	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-9	63	Arabidopsis thaliana	At1g55850	842035	ATCSLE1	encodes a protein similar to cellulose synthase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	36	Hordeum vulgare	Contig8067_at	Contig8067	-	-	1e+0	At1g55850	ATCSLE1	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os02g0725300	AK120054.1	-	Conserved hypothetical protein	8e-2	At4g27990	YGGT family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-3	42	Populus trichocarpa	PtpAffx.205933.1.S1_at	pmrna11774	-	-	3e-1	At1g55850	ATCSLE1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	Ta.24400.1.S1_at	CA626380	-	-	5e+0	At5g02600	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.14	6e-22	103	Vitis vinifera	1609889_at	CF403259	hypothetical protein LOC100260375	-	1e-1	At3g18640	zinc finger protein-related	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.9387.1.A1_at	BM268482	Hypothetical protein LOC100193233	-	4e+0	At4g09440	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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