CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.60410.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.60410.1.S1_at BQ080105 - - 2e-11 At4g38825 - S.X. H.G.
0.06 9.0 Gma.14021.1.S1_at AI966372 - - 2e-2 At1g12665 - S.X. H.G.
0.02 4.5 Gma.1305.1.S1_at CD411822 - - 9e-2 At5g39950 ATTRX2 (THIOREDOXIN 2) S.X. H.G.
0.01 3.4 Gma.17806.2.S1_at AW459179 - - 4e-12 At1g69850 ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2) S.X. H.G.
0.00 1.4 GmaAffx.90612.1.S1_at CF806337 - - 2e-14 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) S.X. H.G.
0.00 1.4 GmaAffx.80375.1.S1_at BG042855 - - 1e+0 At4g22800 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.3 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.1 99.7 GSM244856 28_V71.I1W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
16.0 99.6 GSM293960 17_3091.2F.SLF1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.4 99.6 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.5 99.5 GSM244801 15_V71.I3U4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.5 99.5 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.3 99.5 GSM244937 9_VP9.M2W1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
11.9 99.4 GSM293070 70_C035.1N.SLN3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.6 99.4 GSM182032 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
11.5 99.4 GSM292211 74-C018.1A.R9A3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 2e-64 246 GmaAffx.15800.1.S1_at BE473770 - - 2e-7 At5g18030 auxin-responsive protein, putative C.G. S.X.
0.51 2e-57 222 GmaAffx.76295.1.S1_at BE347326 - - 3e-10 At4g38820 unknown protein C.G. S.X.
0.34 2e-51 202 GmaAffx.89523.1.A1_at CK606544 - - 7e-6 At5g18030 auxin-responsive protein, putative C.G. S.X.
0.34 2e-51 202 GmaAffx.89523.1.S1_at CK606544 - - 7e-6 At5g18030 auxin-responsive protein, putative C.G. S.X.
0.60 5e-49 194 GmaAffx.60661.1.S1_at BQ785452 - - 4e-15 At4g38840 auxin-responsive protein, putative C.G. S.X.
0.20 1e-18 93 Gma.15747.1.A1_at CD401855 - - 5e-8 At4g38820 unknown protein C.G. S.X.
0.26 5e-15 81 GmaAffx.43149.1.A1_at CD401412 - - 3e-3 At5g18030 auxin-responsive protein, putative C.G. S.X.
0.17 8e-8 57 Gma.9961.1.S1_at BE820833 - - 1e-3 At4g34800 auxin-responsive family protein C.G. S.X.
0.10 1e-3 44 Gma.13825.1.A1_at CD406929 - - 5e-1 At1g44224 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-11 69 Arabidopsis thaliana At4g38825 6241125 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 4e-1 34 Hordeum vulgare Contig13327_at Contig13327 - - 6e-3 At1g05300 ZIP5 C.G. S.X.
0.03 6e+0 32 Oryza sativa OsAffx.8888.1.S1_at - - - 0 C.G. S.X.
0.26 2e-20 99 Populus trichocarpa PtpAffx.204269.1.S1_at pmrna8401 SAUR family protein - 1e-4 At2g21210 auxin-responsive protein, putative C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.80974.1.S1_at CA690609 - - 3e+0 At3g10470 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 6e-2 36 Vitis vinifera 1610736_at CD715353 - - 1e+0 At3g43250 cell cycle control protein-related C.G. S.X.
0.03 5e+0 30 Zea mays Zm.832.1.A1_at AY107728.1 hypothetical protein LOC100275137 - 1e+0 At1g54140 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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