Gene omics information

Query gene ID	GmaAffx.59630.1.S1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.59630.1.S1_x_at	BI892854	-	-	2e-1	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.93437.1.S1_s_at	CF808942	-	-	3e-23	At5g10780	-	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.87881.1.S1_at	BU082329	-	-	4e-12	At1g14530	THH1 (TOM THREE HOMOLOG 1)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.68394.1.S1_at	BU082577	-	-	3e+0	At5g03660	unknown protein	S.X.	H.G.	Please select
0.44	63.3	Gma.2892.2.S1_at	BI424590	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.40	57.1	Gma.2892.2.S1_a_at	BI424590	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.2	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293346	34_1550.1Q.R078P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293367	53_1551.1Q.R100U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293380	65_1594.1Q.R302P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293685	23_2129.2C.R207L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293313	94_1237.1P.R145U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-41	167	Gma.15488.1.S1_s_at	CD399398	-	-	2e-74	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.16	3e-41	167	Gma.15488.1.S1_at	CD399398	-	-	2e-74	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.14	6e-15	79	GmaAffx.92496.1.S1_s_at	CF808221	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.14	6e-15	79	GmaAffx.92496.1.S1_at	CF808221	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.13	6e-15	79	Gma.17719.1.S1_at	AI960464	-	-	2e-68	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.06	2e-2	38	Gma.2841.2.S1_s_at	BM523133	-	-	2e-5	At4g10970	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	PsAffx.C107000013_at	PsAffx.C107000013	-	-	3e+0	At3g63095	-	C.G.	S.X.	Please select
0.04	3e-1	34	GmaAffx.47497.1.S1_at	BQ081157	-	-	1e+0	At5g26848	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	PsAffx.C68000071_at	PsAffx.C68000071	-	-	2e+0	At3g51340	aspartic-type endopeptidase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-1	34	Arabidopsis thaliana	At1g78870	844224	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-1	34	Hordeum vulgare	Contig3796_at	Contig3796	-	-	1e-38	At1g16890	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select
0.06	7e-6	50	Oryza sativa	Os.14354.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-4	44	Populus trichocarpa	PtpAffx.14123.2.A1_s_at	CA824889	hypothetical protein	-	3e-81	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	6e-5	46	Triticum aestivum	TaAffx.83264.1.S1_at	CA659573	-	-	2e+1	At5g41350	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.07	4e-3	38	Vitis vinifera	1618184_at	BQ795140	hypothetical protein LOC100255523	-	5e-84	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.07	4e-4	42	Zea mays	Zm.4656.1.A1_at	CF635280	IDP334 protein	-	4e-35	At1g16890	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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