Gene omics information

Query gene ID	GmaAffx.59500.3.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	GmaAffx.59500.3.S1_at	BG790368	-	-	2e+0	At5g57181	unknown protein	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.59500.1.S1_at	BI497613	-	-	6e-2	At4g09840	unknown protein	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.74168.1.S1_at	CB063592	-	-	8e-11	At4g24160	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.18	22.3	Gma.15545.1.A1_at	BU550455	-	-	1e-16	At1g01560	ATMPK11	S.X.	H.G.	Please select
0.07	10.2	Gma.8702.1.S1_s_at	BU761055	-	-	3e-1	At2g03310	unknown protein	S.X.	H.G.	Please select
0.05	8.0	Gma.1106.1.S1_at	CD416163	-	-	1e-1	At5g53330	-	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.93084.1.S1_s_at	CF806262	-	-	7e+0	At5g18380	40S ribosomal protein S16 (RPS16C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.7	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
18.2	99.7	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.6	99.5	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.4	99.5	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.8	99.1	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.5	99.1	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.0	99.0	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.3	98.9	GSM292913	86_1447.1L.R273L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.8	98.4	GSM294266	22_2417.2I.R236L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	4e-24	111	GmaAffx.47330.1.S1_at	BU926438	-	-	2e-1	At4g09840	unknown protein	C.G.	S.X.	Please select
0.46	3e-15	81	GmaAffx.90845.1.S1_at	CF806570	-	-	1e-3	At4g34138	UGT73B1 (UDP-glucosyl transferase 73B1)	C.G.	S.X.	Please select
0.04	7e-4	44	Gma.8532.1.S1_at	AF198453.1	UDP-glycose:flavonoid glycosyltransferase	-	2e-2	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.04	7e-4	44	Gma.8532.1.A1_at	AF198453.1	-	-	2e-2	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.06	4e-2	38	Gma.17879.1.S1_at	AW348246	-	-	5e+0	At4g30180	transcription factor/ transcription regulator	C.G.	S.X.	Please select
0.01	7e-1	34	Gma.10650.1.S1_at	AW348549	glucosyltransferase	-	7e-2	At4g34131	UGT73B3 (UDP-glucosyl transferase 73B3)	C.G.	S.X.	Please select
0.03	3e+0	32	PsAffx.C45000069_at	PsAffx.C45000069	-	-	5e-1	At3g05990	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	3e+0	32	PsAffx.C4000058_at	PsAffx.C4000058	-	-	4e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e+0	32	PsAffx.C214000010_at	PsAffx.C214000010	-	-	2e-3	At3g54250	mevalonate diphosphate decarboxylase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e+0	32	Arabidopsis thaliana	At5g57181	6241379	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-5	46	Hordeum vulgare	Contig16277_at	Contig16277	-	-	5e+0	At5g61570	protein kinase family protein	C.G.	S.X.	Please select
0.09	2e-8	59	Oryza sativa	Os01g0176000	AK103303.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	3e-10	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-2	40	Populus trichocarpa	PtpAffx.146922.2.A1_at	CV253471	hypothetical protein	-	6e-9	At4g34131	UGT73B3 (UDP-glucosyl transferase 73B3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-6	52	Triticum aestivum	Ta.1120.1.S1_x_at	CA659877	-	-	1e+0	At3g52360	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1614728_at	CF215143	hypothetical protein LOC100251494	-	4e+0	At3g21360	electron carrier/ oxidoreductase	C.G.	S.X.	Please select
0.10	1e-12	71	Zea mays	Zm.13390.1.A1_at	AF457982.1	-	-	4e+0	At3g01328	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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