Gene omics information

Query gene ID	GmaAffx.59462.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	67.7	GmaAffx.59462.1.S1_s_at	BI469429	-	-	2e-1	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.55	76.3	Gma.4877.1.S1_a_at	BM885097	-	-	1e-7	At1g07180	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.29	39.0	Gma.11007.1.S1_a_at	CA850791	-	-	2e-2	At3g22240	unknown protein	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.91411.1.S1_x_at	CF807136	-	-	1e-8	At1g07180	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.1301.74.S1_s_at	AW704103	-	-	2e-1	At4g16140	proline-rich family protein	S.X.	H.G.	Please select
0.07	10.2	Gma.16706.1.S1_s_at	BU551340	-	-	6e-20	At3g60100	CSY5 (citrate synthase 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	99.1	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4	98.2	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM293313	94_1237.1P.R145U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171686	30_V.F.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.4	97.6	GSM293617	46_3031.2B.R9B3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	779	Gma.17765.1.S1_at	BM188674	-	-	4e-1	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.10	1e-15	83	GmaAffx.48895.1.S1_at	BQ080160	-	-	3e+0	At3g11825	-	C.G.	S.X.	Please select
0.03	7e-2	38	Gma.3969.2.S1_at	CD412522	-	-	1e-1	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please select
0.03	7e-2	38	Gma.3969.1.S1_s_at	AW349494	-	-	1e-1	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please select
0.04	3e-1	36	Gma.873.1.A1_at	BE822696	-	-	4e+0	At5g48870	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.CL810Contig1_at	PsAffx.CL810Contig1	-	-	3e+0	At4g10457	SCRL1 (SCR-Like 1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C38000058_at	PsAffx.C38000058	-	-	5e-5	At4g17950	DNA-binding family protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C149000020_at	PsAffx.C149000020	-	-	7e-1	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.5028.1.S1_at	CD748396	-	-	1e+0	At5g41200	AGL75 (AGAMOUS-LIKE 75)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	36	Arabidopsis thaliana	At4g12530	826865	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HVSMEf0002E07r2_at	HVSMEf0002E07r2	-	-	3e+0	At5g65650	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	Oryza sativa	OsAffx.8700.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.308.6.A1_s_at	BP923447	hypothetical protein	-	5e-9	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.9008.1.A1_at	BQ162764	-	-	2e-1	At5g30520	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1614655_at	CB969062	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.4524.1.A1_at	CD971358	-	-	1e+1	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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