Gene omics information

Query gene ID	GmaAffx.59154.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	GmaAffx.59154.1.S1_at	BG508624	-	-	7e+0	At4g37685	unknown protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.87526.1.S1_at	BM954581	-	-	6e+0	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.78968.2.S1_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.86361.1.S1_s_at	BG508205	alternative oxidase 2b	-	4e-9	At3g27620	AOX1C	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.91355.1.S1_s_at	CF807080	alternative oxidase 2b	-	7e-5	At5g64210	AOX2	S.X.	H.G.	Please select
0.12	15.1	Gma.2143.1.S1_at	BE659691	-	-	2e-60	At1g77810	galactosyltransferase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	99.2	GSM292205	67-C015.1A.V7A3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.2	99.2	GSM292422	25_1253.1G.R161U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.4	99.1	GSM293326	16_1591.1Q.R301U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.4	99.1	GSM292414	18_1265.1G.R168U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM292216	8-1023.1A.R013L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM292370	44_1227.1F.R139U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM292249	63_1047.1B.R027U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM292213	76_1023.1A.R013U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM292320	68_1189.1E.R115U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	38	GmaAffx.91444.1.A1_s_at	CF807169	-	-	7e-2	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.06	2e-1	38	GmaAffx.87415.1.S1_at	BM568006	-	-	3e+0	At4g03030	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.03	2e-1	38	Gma.13388.1.S1_s_at	CD397245	-	-	2e+0	At4g00120	IND (INDEHISCENT)	C.G.	S.X.	Please select
0.02	7e-1	36	PsAffx.psMA010xD14f_at	PsAffx.psMA010xD14f	-	-	5e+0	At1g60870	MEE9 (maternal effect embryo arrest 9)	C.G.	S.X.	Please select
0.00	3e+0	34	PsAffx.C70000011_at	PsAffx.C70000011	-	-	1e-2	At5g06380	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C3000081_at	PsAffx.C3000081	-	-	2e+0	At1g63160	replication factor C 40 kDa, putative	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.16917.1.S1_at	CB380164	-	-	5e+0	At3g20180	metal ion binding	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.82055.1.S1_at	BI321308	-	-	1e+0	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.82108.1.S1_at	BE474161	-	-	4e-10	At5g24740	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At4g37685	829923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	32	Hordeum vulgare	Contig18738_at	Contig18738	-	-	4e+0	At5g11950	protein homodimerization	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.25555.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.214201.1.S1_at	pmrna27637	hypothetical protein	-	8e-1	At1g01810	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	32	Triticum aestivum	TaAffx.121855.1.S1_at	BJ209711	-	-	4e+0	At5g49300	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.03	6e-4	44	Vitis vinifera	1617174_at	CB971967	hypothetical protein LOC100242373	-	9e-2	At5g16080	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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