Gene omics information

Query gene ID GmaAffx.58612.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7087.1GmaAffx.58612.1.S1_atBM954406--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.6786.1GmaAffx.90621.1.S1_s_atCF806346--4e-50At2g21270ubiquitin fusion degradation UFD1 family proteinS.X.H.G.
0.5878.8GmaAffx.86611.1.S1_atBI316735--2e-34At5g02800protein kinase family proteinS.X.H.G.
0.5878.8GmaAffx.88360.1.S1_atBQ473502--1e-7At1g71980protease-associated zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.5678.2GmaAffx.44003.2.S1_atBM094470--1e-13At5g18830SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)S.X.H.G.
0.5273.1GmaAffx.29121.1.S1_atBU762958--1e+0At4g17310unknown proteinS.X.H.G.
0.5172.3GmaAffx.90994.1.S1_s_atCF806719--7e-12At4g11410short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.5071.7GmaAffx.76206.1.S1_atBE059995--5e-59At1g71820SEC6S.X.H.G.
0.5071.7Gma.16282.4.S1_a_atAW234404--1e-20At1g43190polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeS.X.H.G.
0.5071.7GmaAffx.18114.2.S1_atBU762948--3e-10At3g05090transducin family protein / WD-40 repeat family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.497.6GSM29335845_1548.1Q.R070P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.696.7GSM29282582_C184.1K.R9K1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.596.6GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.596.6GSM29377319_2187.2D.R169L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.396.2GSM29305153_C022.1N.SLN1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.396.2GSM29274812_1418.1K.R258P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.995.4GSM29216823_1022.1A.R012P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.895.1GSM29348066_C092.1R.R9R1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.794.8GSM29430253_2400.2I.R178P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.694.5GSM29274711_1429.1K.R264L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.258e-53208Gma.12683.1.S1_atAW100064--5e-28At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.407e-47188GmaAffx.83081.1.S1_atBM093998--3e-13At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.071e-26121GmaAffx.58612.2.S1_atAW306270--6e-28At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.248e-1995PsAffx.C185000007_atPsAffx.C185000007--2e+0At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.101e-1791GmaAffx.75607.1.S1_atAW308961--2e-21At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.121e-861PsAffx.C128000016_atPsAffx.C128000016--2e-4At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.123e-344HgAffx.18811.1.S1_atCA940369--3e-7At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.017e-136PsAffx.C57000065_atPsAffx.C57000065--2e-1At2g40520nucleotidyltransferase family proteinC.G.S.X.
0.017e-136PsAffx.C4000068_atPsAffx.C4000068--2e-1At5g20150SPX1 (SPX DOMAIN GENE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.266e-1995Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.343e-50198Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.354e-74280Oryza sativaOs08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.102e-757Populus trichocarpaPtpAffx.111691.1.S1_atCK106380histone deacetylase /// histone deacetylase-1e-12At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.551e-69264Triticum aestivumTaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.073e-1891Vitis vinifera1620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.383e-68258Zea maysZm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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