CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.58610.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.9 GmaAffx.58610.1.S1_at BF066199 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) S.X. H.G.
0.83 92.5 GmaAffx.68425.1.S1_at BI425905 - - 1e-35 At3g57650 LPAT2 S.X. H.G.
0.67 86.1 GmaAffx.29121.1.S1_at BU762958 - - 1e+0 At4g17310 unknown protein S.X. H.G.
0.60 80.7 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) S.X. H.G.
0.60 80.7 GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
0.57 78.8 GmaAffx.43069.1.S1_at AI494747 - - 4e-7 At1g14570 UBX domain-containing protein S.X. H.G.
0.48 67.7 GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 97.1 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.3 96.2 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293367 53_1551.1Q.R100U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293639 66_2084.2B.R288P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293333 22_1549.1Q.R078L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM292886 61_1483.1L.R292U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293313 94_1237.1P.R145U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-8 59 Gma.9081.1.S1_at CA803057 - - 2e-22 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative C.G. S.X.
0.05 9e-4 44 PsAffx.C95000019_at PsAffx.C95000019 - - 5e-3 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.01 9e-4 44 PsAffx.C160000019_at PsAffx.C160000019 - - 6e-4 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.01 3e-3 42 PsAffx.C232000013_at PsAffx.C232000013 - - 3e-2 At2g31220 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 3e-3 42 PsAffx.C186000047_at PsAffx.C186000047 - - 7e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.06 3e-3 42 GmaAffx.57325.1.S1_at AW203639 - - 2e-4 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.06 3e-3 42 Gma.8185.1.A1_s_at BU548568 - - 2e-5 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.06 3e-3 42 Gma.8185.1.A1_at BU548568 - - 2e-5 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.01 1e-2 40 PsAffx.C33000076_at PsAffx.C33000076 - - 5e-6 At3g15095 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 40 Arabidopsis thaliana At3g49430 824105 SRp34a (Ser/Arg-rich protein 34a) F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVA - - - C.G. S.X.
0.04 5e-3 40 Hordeum vulgare Contig13407_s_at Contig13407 - - 8e-5 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.04 7e-2 38 Oryza sativa OsAffx.22080.1.S1_at - - - 0 C.G. S.X.
0.06 3e-3 42 Populus trichocarpa PtpAffx.163022.1.S1_s_at CX175629 hypothetical protein - 2e-43 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative C.G. S.X.
0.06 2e-1 36 Triticum aestivum Ta.16073.1.S1_at CA597353 - - 8e-3 At1g18790 RWP-RK domain-containing protein C.G. S.X.
0.05 3e-3 40 Vitis vinifera 1611563_at CF213078 - - 2e-4 At5g40980 unknown protein C.G. S.X.
0.07 4e-3 40 Zea mays Zm.13916.1.A1_at AF037027.1 peroxidase R15 - 6e-7 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage