Gene omics information

Query gene ID	GmaAffx.5831.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	GmaAffx.5831.1.S1_at	BU549817	-	-	2e-39	At1g64680	unknown protein	S.X.	H.G.	Please select
0.57	78.8	Gma.11067.1.S1_at	BG839085	alanine aminotransferase 3	-	7e-101	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	S.X.	H.G.	Please select
0.57	78.8	Gma.6333.1.A1_at	CD417235	-	-	7e-49	At5g61410	RPE	S.X.	H.G.	Please select
0.56	78.2	Gma.3733.1.S1_at	CD399629	-	-	1e-7	At1g50320	ATHX	S.X.	H.G.	Please select
0.50	71.7	Gma.5549.2.S1_a_at	CD414941	-	-	2e-3	At2g22080	unknown protein	S.X.	H.G.	Please select
0.40	57.1	Gma.11067.1.S1_a_at	BG839085	alanine aminotransferase 2 /// alanine aminotransferase 3	-	7e-101	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
94.0	100.0	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
83.4	100.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
78.3	100.0	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
68.6	100.0	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
65.4	100.0	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
62.7	99.9	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
62.6	99.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
62.3	99.9	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
60.0	99.9	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
55.5	99.9	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-53	210	Gma.12917.1.A1_at	CD395454	-	-	4e-1	At2g28210	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.02	1e-1	38	PsAffx.C18000010_at	PsAffx.C18000010	-	-	2e+0	At2g44940	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C13000075_at	PsAffx.C13000075	-	-	1e+0	At5g52930	unknown protein	C.G.	S.X.	Please select
0.06	5e-1	36	Gma.3286.1.S1_at	BQ298747	-	-	2e+0	At3g46360	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C55000064_at	PsAffx.C55000064	-	-	3e+0	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.02	2e+0	34	HgAffx.21850.1.S1_at	BI749400	-	-	2e+0	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.81769.1.S1_at	BG507410	-	-	8e-1	At5g30520	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.1241.1.A1_at	BE917614	-	-	3e+0	At3g22730	F-box family protein	C.G.	S.X.	Please select
0.02	9e+0	32	PsAffx.C73000010_at	PsAffx.C73000010	-	-	4e-2	At5g12910	histone H3, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-39	163	Arabidopsis thaliana	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+1	30	Hordeum vulgare	HVSMEf0015M13r2_s_at	HVSMEf0015M13r2	-	-	4e+0	At3g23350	-	C.G.	S.X.	Please select
0.13	2e-17	91	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	2e-77	289	Populus trichocarpa	Ptp.1041.1.S1_at	CK090202	hypothetical protein	-	3e-45	At1g64680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	Ta.25605.1.S1_at	CA743490	-	-	4e-2	At2g29760	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.26	3e-67	254	Vitis vinifera	1612680_at	BM437446	-	-	3e-27	At1g64680	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9614.1.A1_at	BM335440	-	-	5e+0	At5g60650	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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