Gene omics information

Query gene ID	GmaAffx.58190.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.1	GmaAffx.58190.1.S1_at	BE610236	-	-	4e-7	At5g12080	MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)	S.X.	H.G.	Please select
0.54	74.8	Gma.3727.1.S1_at	CD406941	transcription factor bZIP98	-	2e-16	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	S.X.	H.G.	Please select
0.44	63.3	Gma.2314.1.S1_at	AW310385	-	-	1e-33	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.59378.1.S1_at	BI425133	-	-	1e+0	At1g80100	AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)	S.X.	H.G.	Please select
0.39	54.5	Gma.2314.4.S1_a_at	BE330278	-	-	4e-76	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	S.X.	H.G.	Please select
0.39	54.5	GmaAffx.46711.1.S1_at	BI497564	-	-	4e+0	At4g25560	AtMYB18 (myb domain protein 18)	S.X.	H.G.	Please select
0.38	53.3	Gma.7467.1.A1_at	AI959991	WRKY9 protein	-	3e-23	At2g03340	WRKY3	S.X.	H.G.	Please select
0.31	42.2	Gma.17436.1.S1_at	CD397773	-	-	4e-23	At4g36450	ATMPK14 (Mitogen-activated protein kinase 14)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.10095.2.S1_at	BF070472	-	-	6e-12	At1g59650	CW14	S.X.	H.G.	Please select
0.29	39.0	Gma.7035.1.S1_at	AW348267	-	-	8e-11	At5g06260	nucleolar protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.9	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.9	98.5	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM292973	50_1491.1M.R296U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292372	46_C097.1F.SLF2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293848	87_2171.2D.R243U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293031	35_1055.1N.R032U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293990	44_2245.2F.R272U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-60	234	Gma.7562.1.A1_at	BQ298534	-	-	1e+0	At1g06100	fatty acid desaturase family protein	C.G.	S.X.	Please select
0.03	5e-1	36	HgAffx.2985.1.S1_at	CK349712	-	-	3e+0	At2g37810	CHP-rich zinc finger protein, putative	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.83421.2.S1_at	BF425371	-	-	4e-15	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL62Contig1_at	PsAffx.CL62Contig1	-	-	3e+0	At3g44235	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C18000020_at	PsAffx.C18000020	-	-	3e+0	At1g23040	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.1411.1.S1_at	CD417799	-	-	8e-13	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.1411.1.S1_a_at	CD417799	-	-	8e-13	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.psMA008xB11f_at	PsAffx.psMA008xB11f	-	-	6e+0	At5g18920	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C50000075_at	PsAffx.C50000075	-	-	2e-1	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-7	56	Arabidopsis thaliana	At5g12080	831081	MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-3	42	Hordeum vulgare	Contig9205_at	Contig9205	-	-	5e-4	At1g53470	MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4)	C.G.	S.X.	Please select
0.05	3e-3	44	Oryza sativa	Os02g0668000	AK101871.1	-	MscS Mechanosensitive ion channel family protein	1e-7	At2g17010	mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	5e-38	159	Populus trichocarpa	PtpAffx.206645.1.S1_at	pmrna13196	hypothetical protein	-	4e-9	At5g12080	MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e+0	34	Triticum aestivum	Ta.6800.1.S1_at	BJ311176	-	-	4e-5	At1g78610	MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6)	C.G.	S.X.	Please select
0.10	7e-15	79	Vitis vinifera	1618463_at	CF207350	hypothetical protein LOC100257841	-	7e-3	At1g53470	MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4)	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	ZmAffx.172.1.A1_at	AI668238	-	-	3e+0	Atmg00240	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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