Gene omics information

Query gene ID	GmaAffx.58176.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	S.X.	H.G.	Please select
0.53	74.2	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	S.X.	H.G.	Please select
0.29	39.0	Gma.11997.1.S1_at	BI971274	-	-	5e-7	At1g61065	unknown protein	S.X.	H.G.	Please select
0.23	29.9	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.5	GSM294302	53_2400.2I.R178P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293794	38_3072.2D.SLD3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293790	34_2150.2D.R295P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294042	91_3108.2F.SLF3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293892	42_2212.2E.R101P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293594	25_2056.2B.R020P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293393	77_C086.1Q.SLQ3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293724	59_2130.2C.R207P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	GmaAffx.66119.1.S1_at	AI938978	-	-	3e-1	At1g29962	AGL64 (AGAMOUS-LIKE 64)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL1Contig43_s_at	PsAffx.CL1Contig43	-	-	7e-1	At1g65445	transferase-related	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C73000050_at	PsAffx.C73000050	-	-	3e+0	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C144000045_at	PsAffx.C144000045	-	-	3e+0	At5g63460	SAP domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.7245.1.S1_at	CB824966	-	-	1e+0	At5g03550	-	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.13457.2.S1_at	CB826321	-	-	1e+0	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.73827.1.S1_at	BF424653	beclin 1 protein	-	1e-6	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.49175.1.A1_at	BE584012	-	-	4e+0	At5g67140	F-box family protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.2198.1.A1_at	CD414754	-	-	7e-1	At5g02090	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At2g39540	818539	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	34	Hordeum vulgare	HVSMEl0002G04r2_at	HVSMEl0002G04r2	-	-	8e+0	Atmg01220	-	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os09g0315200	AK105900.1	-	Conserved hypothetical protein	4e-2	At2g01340	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-4	46	Populus trichocarpa	PtpAffx.210731.1.S1_at	pmrna21051	hypothetical protein	-	1e-12	At3g49060	protein kinase family protein / U-box domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.52234.1.S1_at	CA710869	-	-	3e+0	At2g38310	unknown protein	C.G.	S.X.	Please select
0.16	7e-18	89	Vitis vinifera	1610925_at	CF209806	hypothetical protein LOC100267999	-	7e-8	At3g49060	protein kinase family protein / U-box domain-containing protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.15330.1.A1_at	CB350785	hypothetical protein LOC100278759	-	4e+0	At3g12955	auxin-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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