Gene omics information

Query gene ID	GmaAffx.57612.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.57612.1.S1_at	AW568460	-	-	1e+0	At3g43682	unknown protein	S.X.	H.G.	Please select
0.91	98.6	GmaAffx.79126.1.S1_at	AW508783	-	-	4e+0	At5g16460	-	S.X.	H.G.	Please select
0.91	98.6	GmaAffx.67969.1.S1_at	AW395744	-	-	8e-2	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.73695.1.S1_at	AW471773	-	-	6e-9	At3g24650	ABI3 (ABA INSENSITIVE 3)	S.X.	H.G.	Please select
0.73	88.9	Gma.1880.2.S1_at	AW704809	-	-	3e+0	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.84879.1.S1_at	AI735921	-	-	6e-15	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
328.4	100.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
323.2	100.0	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
320.2	100.0	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
294.1	100.0	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
289.1	100.0	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
288.6	100.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
279.0	100.0	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
276.8	100.0	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
220.1	100.0	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
184.2	100.0	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-1	38	Gma.11088.1.S1_at	BE609918	-	-	4e+0	At5g64900	PROPEP1	C.G.	S.X.	Please select
0.02	4e-1	36	GmaAffx.48757.1.A1_at	BU547129	-	-	2e+0	At2g03630	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C209000004_at	PsAffx.C209000004	-	-	7e-2	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.91338.1.S1_at	CF807063	-	-	4e-12	At1g73010	phosphatase	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.psHB041xP13f_at	PsAffx.psHB041xP13f	-	-	2e-8	At2g27360	lipase, putative	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.CL239Contig1_at	PsAffx.CL239Contig1	-	-	3e-3	At2g36530	LOS2	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C8000100_at	PsAffx.C8000100	-	-	4e-1	At1g32570	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C25000102_at	PsAffx.C25000102	-	-	2e+0	At2g26810	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C19000020_at	PsAffx.C19000020	-	-	4e+0	At5g48350	nucleic acid binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g43682	823473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	HB23F22r_at	HB23F22r	-	-	3e+0	At3g58010	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	OsAffx.9126.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.222112.1.S1_x_at	pmrna39334	hypothetical protein	-	2e+0	At5g49015	Expressed protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.92642.1.A1_at	BJ255300	-	-	3e-1	At5g39910	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1608035_at	CF208115	hypothetical protein LOC100248116	-	3e-1	At3g02100	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.86.1.A1_at	AI665323	hypothetical protein LOC100193226	-	5e-5	At5g25265	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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