Gene omics information

Query gene ID	GmaAffx.57330.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	GmaAffx.57330.2.S1_at	AW432207	-	-	4e-18	At2g04650	ADP-glucose pyrophosphorylase family protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.57984.1.S1_at	AW317447	-	-	2e-6	At1g48790	mov34 family protein	S.X.	H.G.	Please select
0.33	46.1	Gma.7674.1.A1_at	BQ785403	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.26	33.9	Gma.2742.2.S1_at	BI785482	-	-	1e-6	At3g63310	glutamate binding	S.X.	H.G.	Please select
0.25	32.6	Gma.10759.1.S1_at	BE822425	-	-	1e-29	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	S.X.	H.G.	Please select
0.19	23.7	Gma.3535.1.S1_x_at	CD392670	-	-	2e+0	At5g24650	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	95.6	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.4	93.8	GSM292902	76_C215.1L.R9L3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM292955	34_1501.1M.R303L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM292600	2_1343.1I.R216L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293053	55_1057.1N.R033L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293958	15_2271.2F.R042L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293800	43_2177.2D.R141L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293953	10_2247.2F.R193U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-8	59	Gma.7749.1.A1_at	BU549947	-	-	8e-9	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.3557.1.S1_at	BI943498	-	-	1e+0	At3g59330	anthocyanin-related membrane protein family	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C276000009_at	PsAffx.C276000009	-	-	4e-2	At1g71480	nuclear transport factor 2 (NTF2) family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.74539.1.S1_at	BE023523	-	-	1e-7	At1g26670	VTI1B	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.62309.1.S1_at	AW704333	-	-	3e-3	At2g01900	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.psMA013xF16f_at	PsAffx.psMA013xF16f	-	-	5e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C161000019_at	PsAffx.C161000019	-	-	4e+0	At4g10920	KELP	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.8699.1.S1_at	CB379802	-	-	3e-1	At1g35830	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	5e+0	32	GmaAffx.48130.1.S1_at	BU965313	-	-	3e+0	At4g17540	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	4e-18	91	Arabidopsis thaliana	At2g04650	815007	ADP-glucose pyrophosphorylase family protein	F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:cellular_component unknown;BOAMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	7e-12	69	Hordeum vulgare	Contig14019_at	Contig14019	-	-	2e-16	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.14	7e-6	52	Oryza sativa	Os03g0208900	AK070806.1	-	Nucleotidyl transferase domain containing protein	2e-26	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	4e-19	95	Populus trichocarpa	Ptp.2965.1.A1_at	CV268602	hypothetical protein	-	4e-38	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-9	63	Triticum aestivum	Ta.30535.2.S1_at	CA645648	-	-	1e-8	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.23	1e-9	61	Vitis vinifera	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.06	3e-11	67	Zea mays	Zm.14511.1.S1_at	AY105135.1	hypothetical protein LOC100192721	-	1e-9	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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