Gene omics information

Query gene ID GmaAffx.56720.1.A1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6786.1GmaAffx.56720.1.A1_atCD391617--1e-2At2g19480NAP1S.X.H.G.
0.9198.6GmaAffx.32258.1.S1_atBE820234--6e-2At1g75030ATLP-3S.X.H.G.
0.8793.2GmaAffx.29658.1.A1_atCD414165--3e+0At2g36325hydrolase, acting on ester bondsS.X.H.G.
0.8793.2GmaAffx.77748.1.S1_atBE059124--2e-1At1g77765unknown proteinS.X.H.G.
0.8793.2Gma.10661.1.S1_atBE659273--5e+0At5g65220ribosomal protein L29 family proteinS.X.H.G.
0.8291.9GmaAffx.34868.1.A1_atBU545422--3e+0At4g39990RABA4B (RAB GTPASE HOMOLOG A4B)S.X.H.G.
0.8091.5GmaAffx.6271.1.S1_atCA799002--2e-1At5g38810F-box family proteinS.X.H.G.
0.8091.5Gma.10661.2.S1_atAW119498--1e+0At3g46320histone H4S.X.H.G.
0.7689.7GmaAffx.48250.1.S1_atAW396199MYB transcription factor MYB185-4e+0At5g15230GASA4 (GAST1 PROTEIN HOMOLOG 4)S.X.H.G.
0.7589.5Gma.5359.1.S1_atBM092603--1e+1At5g45350proline-rich family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
892.2100.0GSM201125Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
747.4100.0GSM201124Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
257.3100.0GSM170927Rust Innoculated, biological rep2GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
71.7100.0GSM191084Soybean_Cotyledon_EPD2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
71.6100.0GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
44.199.9GSM170929Rust Innoculated, biological rep3GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
38.499.9GSM182040Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stage
38.099.9GSM170924V2 Control, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
33.799.9GSM147945Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stage
31.999.9GSM182039Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.464e-83307GmaAffx.58057.1.S1_atBF598879--1e+0At2g46130WRKY43C.G.S.X.
0.054e-342GmaAffx.74636.1.S1_atBU927032--3e-4At2g43650EMB2777 (EMBRYO DEFECTIVE 2777)C.G.S.X.
0.011e-240PsAffx.C53000035_s_atPsAffx.C53000035--8e-2At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeC.G.S.X.
0.021e-240PsAffx.C206000013_atPsAffx.C206000013--7e-2At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeC.G.S.X.
0.031e-240PsAffx.C2000205_s_atPsAffx.C2000205--3e-2At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeC.G.S.X.
0.041e-240GmaAffx.15136.1.A1_atBU545598--9e-2At3g57062unknown proteinC.G.S.X.
0.031e-240Gma.2911.1.S1_atBM891517--4e-58At4g26110NAP1C.G.S.X.
0.031e-240Gma.2911.1.S1_a_atBM891517--4e-58At4g26110NAP1C.G.S.X.
0.031e-240Gma.2911.1.S1_x_atBM891517--4e-58At4g26110NAP1C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-240Arabidopsis thalianaAt2g19480816467NAP1This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.---C.G.S.X.
0.045e-340Hordeum vulgareContig2590_atContig2590--4e-32At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeC.G.S.X.
0.078e-238Oryza sativaOs04g04981009632.m04010-Conserved hypothetical protein2e-2At5g3974060S ribosomal protein L5 (RPL5B)C.G.S.X.
0.056e-238Populus trichocarpaPtpAffx.221611.1.S1_atpmrna38582hypothetical protein-1e-4At5g24060unknown proteinC.G.S.X.
0.062e-136Triticum aestivumTaAffx.110807.1.S1_atCA654006--3e-1At1g51730RWD domain-containing proteinC.G.S.X.
0.061e-238Vitis vinifera1609773_atCB978867hypothetical protein LOC100261732-1e+0At3g11600unknown proteinC.G.S.X.
0.053e-134Zea maysZmAffx.929.1.S1_atAI795460--5e-2At5g17900-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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